Wall clock time and date at job start Mon Mar 30 2020 02:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00128 * 2 1 4 4 H 1.48497 * 109.47392 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46979 * 300.00602 * 3 2 1 6 6 H 1.48505 * 109.47268 * 60.00072 * 3 2 1 7 7 C 1.37874 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00290 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47363 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.10883 * 53.44889 * 10 9 7 12 12 C 1.53547 * 110.08689 * 291.89451 * 10 9 7 13 13 C 1.53385 * 107.25407 * 223.38903 * 12 10 9 14 14 C 1.53786 * 107.62427 * 0.95656 * 13 12 10 15 15 H 1.09001 * 111.83413 * 253.57803 * 14 13 12 16 16 C 1.54156 * 109.16059 * 129.29317 * 14 13 12 17 17 C 1.54213 * 106.77894 * 248.14509 * 16 14 13 18 18 C 1.56440 * 103.93142 * 23.31038 * 17 16 14 19 19 C 1.53446 * 110.08577 * 175.00109 * 10 9 7 20 20 H 1.08998 * 112.72230 * 268.85572 * 19 10 9 21 21 H 0.96997 * 119.99850 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47315 * 60.00117 * 9 7 2 23 23 H 1.08996 * 109.47267 * 300.00103 * 9 7 2 24 24 H 1.08997 * 109.88405 * 103.97753 * 12 10 9 25 25 H 1.08998 * 109.88270 * 342.80490 * 12 10 9 26 26 H 1.08997 * 109.82093 * 241.42993 * 13 12 10 27 27 H 1.09001 * 109.82061 * 120.47950 * 13 12 10 28 28 H 1.08995 * 109.99683 * 7.47576 * 16 14 13 29 29 H 1.08998 * 109.99594 * 128.77314 * 16 14 13 30 30 H 1.09002 * 110.47741 * 141.39195 * 17 16 14 31 31 H 1.09005 * 110.47675 * 263.87264 * 17 16 14 32 32 H 1.09000 * 110.21423 * 203.18261 * 18 17 16 33 33 H 1.09007 * 112.02214 * 79.25302 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 1 2.9528 -3.5512 0.8199 12 6 2.9957 -3.7129 -1.3405 13 6 3.0543 -5.1831 -1.7737 14 6 2.3185 -6.0123 -0.7078 15 1 3.0110 -6.5802 -0.0865 16 6 1.2880 -6.9261 -1.4002 17 6 -0.1077 -6.4066 -0.9997 18 6 0.1428 -4.9107 -0.6166 19 6 1.4966 -4.9956 0.1237 20 1 1.3760 -5.3149 1.1589 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 4.0057 -3.3230 -1.2144 25 1 2.4605 -3.1272 -2.0879 26 1 4.0928 -5.5071 -1.8422 27 1 2.5638 -5.3037 -2.7395 28 1 1.4095 -6.8723 -2.4820 29 1 1.4149 -7.9544 -1.0617 30 1 -0.7940 -6.4673 -1.8444 31 1 -0.4964 -6.9719 -0.1526 32 1 -0.6422 -4.5564 0.0514 33 1 0.2219 -4.2713 -1.4959 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260046438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:20 Heat of formation + Delta-G solvation = -53.942429 kcal Electronic energy + Delta-G solvation = -12626.658655 eV Core-core repulsion = 10649.707530 eV Total energy + Delta-G solvation = -1976.951125 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75019 -35.74156 -34.18704 -32.33000 -29.17237 -27.98450 -26.18551 -24.16724 -21.56017 -20.35906 -19.45440 -18.36816 -17.28537 -16.52538 -15.60401 -15.19597 -14.79835 -14.33597 -14.09304 -13.66386 -13.21971 -13.04819 -12.75263 -12.50018 -12.27973 -11.95199 -11.75076 -11.58934 -11.42355 -11.22589 -11.19082 -11.04250 -10.77654 -10.73101 -10.48546 -8.17350 -6.26703 1.37637 1.37833 1.51017 2.41033 3.15124 3.61240 3.74966 3.82189 4.37374 4.39077 4.42872 4.50311 4.72778 4.77696 4.79910 4.90420 5.00493 5.02964 5.13714 5.17114 5.21443 5.23872 5.30647 5.41836 5.46582 5.55320 5.58466 5.66985 5.68015 5.87512 5.96178 6.32647 6.90647 7.41423 8.94285 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.060174 B = 0.009602 C = 0.008737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.203291 B = 2915.319080 C = 3203.987216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.041 3.959 10 C -0.078 4.078 11 H 0.046 0.954 12 C -0.104 4.104 13 C -0.110 4.110 14 C -0.088 4.088 15 H 0.088 0.912 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.091 4.091 20 H 0.072 0.928 21 H 0.261 0.739 22 H 0.000 1.000 23 H -0.020 1.020 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 -12.476 -2.729 13.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.004 3.996 10 C -0.096 4.096 11 H 0.064 0.936 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.106 4.106 15 H 0.107 0.893 16 C -0.150 4.150 17 C -0.157 4.157 18 C -0.152 4.152 19 C -0.109 4.109 20 H 0.091 0.909 21 H 0.070 0.930 22 H 0.018 0.982 23 H -0.002 1.002 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.717 -12.373 -2.744 13.207 hybrid contribution 0.007 1.478 0.195 1.491 sum 3.724 -10.895 -2.550 11.793 Atomic orbital electron populations 1.70110 1.07667 1.27396 1.52286 1.25943 0.95735 1.03128 0.95153 0.85483 0.79115 0.79243 0.77733 1.18753 1.20427 1.20452 1.21746 0.93297 0.92557 1.49456 0.92681 1.19065 0.93779 0.92392 0.94383 1.21504 0.96705 0.94534 0.96904 0.93589 1.21787 0.99003 0.96843 0.96498 1.22140 1.00762 0.93517 0.98343 1.22378 0.96740 0.95491 0.96037 0.89345 1.22313 0.93450 0.98959 1.00242 1.22643 0.97547 0.94342 1.01200 1.22668 0.96383 0.96858 0.99309 1.22486 0.95304 0.94458 0.98663 0.90918 0.92988 0.98222 1.00195 0.93051 0.94205 0.90830 0.91664 0.91290 0.90336 0.91496 0.90863 0.94008 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 3 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 4 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.53 -31.09 8.69 25.60 0.22 -30.87 16 8 H 0.05 3.12 7.72 -2.91 -0.02 3.10 16 9 C 0.04 2.20 3.41 29.85 0.10 2.30 16 10 C -0.08 -3.33 2.64 -10.46 -0.03 -3.36 16 11 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 12 C -0.10 -3.97 5.75 30.91 0.18 -3.79 16 13 C -0.11 -3.20 6.28 30.99 0.19 -3.01 16 14 C -0.09 -2.42 3.80 -9.48 -0.04 -2.46 16 15 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.11 -2.61 6.40 31.40 0.20 -2.41 16 17 C -0.12 -3.14 6.87 32.20 0.22 -2.92 16 18 C -0.11 -4.09 4.98 32.32 0.16 -3.93 16 19 C -0.09 -3.18 3.51 -9.46 -0.03 -3.22 16 20 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 21 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 22 H 0.00 -0.03 6.26 -2.38 -0.01 -0.04 16 23 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 24 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.04 1.70 7.65 -2.39 -0.02 1.69 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.80 7.08 -2.39 -0.02 1.78 16 28 H 0.07 1.52 7.08 -2.39 -0.02 1.50 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 2.09 6.55 -2.38 -0.02 2.08 16 Total: -1.00 -64.31 253.99 5.01 -59.30 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 1.05 Total: 4.38 kcal Atomic # 6 Polarization: -54.99 SS G_CDS: 1.65 Total: -53.34 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.28 Total: -57.88 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -64.31 5.01 -59.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260046438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.359 kcal (2) G-P(sol) polarization free energy of solvation -64.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds