Wall clock time and date at job start Mon Mar 30 2020 02:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34669 * 126.59169 * 2 1 4 4 N 1.34126 * 108.02283 * 179.81819 * 3 2 1 5 5 C 1.30499 * 109.25637 * 0.36973 * 4 3 2 6 6 C 1.50697 * 125.65319 * 179.89139 * 5 4 3 7 7 C 1.52997 * 109.47466 * 269.69476 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 N 1.35046 * 108.69704 * 359.62951 * 5 4 3 17 17 C 1.46500 * 126.39640 * 180.24766 * 16 5 4 18 18 H 1.08997 * 109.46603 * 269.95710 * 1 2 3 19 19 H 1.08998 * 109.47044 * 29.95168 * 1 2 3 20 20 H 1.08994 * 109.47107 * 149.96040 * 1 2 3 21 21 H 1.08001 * 125.98992 * 0.02562 * 3 2 1 22 22 H 1.09002 * 109.47120 * 149.69229 * 6 5 4 23 23 H 1.08998 * 109.46862 * 29.70031 * 6 5 4 24 24 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 25 25 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 26 26 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 27 27 H 1.08992 * 109.47150 * 90.00135 * 17 16 5 28 28 H 1.09003 * 109.46880 * 210.00131 * 17 16 5 29 29 H 1.09003 * 109.47270 * 329.99804 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 0.0040 5 6 3.5969 -0.6507 -0.0014 6 6 4.8318 -1.5143 -0.0017 7 6 5.2494 -1.8069 -1.4442 8 6 6.4847 -2.6700 -1.4444 9 1 6.9275 -2.9793 -0.5092 10 6 7.0491 -3.0656 -2.6386 11 7 6.5095 -2.6894 -3.7774 12 14 8.5799 -4.1361 -2.6389 13 1 8.2911 -5.4132 -1.9381 14 1 8.9852 -4.4199 -4.0390 15 1 9.6808 -3.4258 -1.9397 16 7 2.3230 -1.0990 -0.0009 17 6 1.8944 -2.4999 -0.0008 18 1 -0.3632 -0.0008 1.0277 19 1 -0.3633 0.8904 -0.5131 20 1 -0.3633 -0.8896 -0.5144 21 1 1.9865 2.1117 0.0004 22 1 4.6198 -2.4518 0.5124 23 1 5.6397 -0.9931 0.5119 24 1 5.4614 -0.8694 -1.9583 25 1 4.4414 -2.3281 -1.9577 26 1 6.9068 -2.9674 -4.6176 27 1 1.7885 -2.8474 1.0268 28 1 0.9368 -2.5869 -0.5143 29 1 2.6389 -3.1077 -0.5150 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260065731.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:44 Heat of formation + Delta-G solvation = 39.079630 kcal Electronic energy + Delta-G solvation = -11843.719378 eV Core-core repulsion = 9767.261648 eV Total energy + Delta-G solvation = -2076.457730 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.63026 -34.06781 -33.61916 -32.16221 -30.37811 -26.64741 -26.51684 -24.35420 -21.47488 -20.14574 -18.98459 -16.54044 -15.95540 -15.41713 -14.46504 -14.11915 -13.57839 -13.07197 -12.76021 -12.57041 -12.49694 -12.21735 -12.12159 -12.00759 -11.05479 -10.92549 -10.64679 -9.95355 -9.66230 -9.38364 -9.16835 -9.10110 -8.36378 -7.62168 -6.00914 -4.04803 2.47453 3.22498 3.33179 3.37883 3.40105 3.68750 4.44907 5.02010 5.03255 5.20390 5.27702 5.34596 5.34861 5.58387 5.68205 5.75568 5.91212 5.99652 6.40640 6.56814 6.85190 6.87055 7.24500 7.62474 7.69949 7.78766 7.98122 8.36344 8.69227 9.01699 9.59318 11.10189 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.067447 B = 0.007815 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.043110 B = 3582.119445 C = 3671.420520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.056 4.056 3 C -0.029 4.029 4 N -0.500 5.500 5 C 0.238 3.762 6 C -0.034 4.034 7 C 0.032 3.968 8 C -0.524 4.524 9 H 0.057 0.943 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.894 3.106 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 N -0.458 5.458 17 C 0.071 3.929 18 H 0.064 0.936 19 H 0.076 0.924 20 H 0.059 0.941 21 H 0.162 0.838 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.025 0.975 25 H 0.012 0.988 26 H 0.262 0.738 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 0.875 7.052 13.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.170 4.170 3 C -0.178 4.178 4 N -0.218 5.218 5 C -0.025 4.025 6 C -0.073 4.073 7 C -0.006 4.006 8 C -0.562 4.562 9 H 0.076 0.924 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.201 1.201 16 N -0.141 5.141 17 C -0.072 4.072 18 H 0.083 0.917 19 H 0.095 0.905 20 H 0.078 0.922 21 H 0.179 0.821 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.043 0.957 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.460 1.224 6.866 12.572 hybrid contribution 0.021 -1.083 -0.193 1.101 sum -10.440 0.141 6.673 12.391 Atomic orbital electron populations 1.20094 0.87883 1.02726 1.01866 1.21091 0.94120 0.87330 1.14440 1.21988 0.88925 0.97983 1.08888 1.70275 1.21722 1.08560 1.21193 1.23940 0.85900 0.90910 1.01721 1.20363 0.89262 0.94964 1.02742 1.19050 0.96043 0.97278 0.88243 1.21154 1.11123 1.31468 0.92465 0.92434 1.25014 0.97375 0.96309 0.95586 1.69969 1.40462 1.45470 0.97322 0.86627 0.83415 0.80807 0.76957 1.20246 1.21303 1.20109 1.45183 1.06947 1.06665 1.55329 1.22009 1.02316 0.79905 1.02967 0.91678 0.90502 0.92221 0.82105 0.91780 0.89891 0.95706 0.96930 0.92874 0.91076 0.90264 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.17 36.00 0.37 -0.38 15 2 C -0.06 -0.91 6.95 -81.60 -0.57 -1.48 15 3 C -0.03 -0.53 11.79 -17.81 -0.21 -0.74 15 4 N -0.50 -10.92 11.25 -10.82 -0.12 -11.04 15 5 C 0.24 4.98 7.16 -155.41 -1.11 3.87 15 6 C -0.03 -0.74 5.25 -27.89 -0.15 -0.89 15 7 C 0.03 0.85 4.95 -27.88 -0.14 0.71 15 8 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 15 9 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 10 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 11 N -0.89 -27.04 13.29 55.43 0.74 -26.30 15 12 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 15 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 15 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 16 N -0.46 -8.06 3.15 -116.68 -0.37 -8.43 15 17 C 0.07 0.95 10.61 59.85 0.64 1.59 15 18 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 19 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.06 0.60 7.22 -51.93 -0.38 0.22 15 21 H 0.16 2.39 8.06 -52.49 -0.42 1.97 15 22 H 0.06 1.25 7.70 -51.93 -0.40 0.85 15 23 H 0.08 1.81 8.14 -51.93 -0.42 1.38 15 24 H 0.02 0.73 8.14 -51.93 -0.42 0.30 15 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 15 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 28 H 0.08 0.87 7.20 -51.93 -0.37 0.49 15 29 H 0.10 1.41 7.66 -51.93 -0.40 1.01 15 LS Contribution 252.75 15.07 3.81 3.81 Total: -1.00 -33.04 252.75 -6.60 -39.64 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -4.05 Total: -3.40 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -1.58 Total: -10.78 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.25 Total: -45.78 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.04 -6.60 -39.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065731.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.715 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds