Wall clock time and date at job start Mon Mar 30 2020 02:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34669 * 126.59169 * 2 1 4 4 N 1.34126 * 108.02283 * 179.81819 * 3 2 1 5 5 C 1.30499 * 109.25637 * 0.36973 * 4 3 2 6 6 C 1.50697 * 125.65319 * 179.89139 * 5 4 3 7 7 C 1.52997 * 109.47466 * 269.69476 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 N 1.35046 * 108.69704 * 359.62951 * 5 4 3 17 17 C 1.46500 * 126.39640 * 180.24766 * 16 5 4 18 18 H 1.08997 * 109.46603 * 269.95710 * 1 2 3 19 19 H 1.08998 * 109.47044 * 29.95168 * 1 2 3 20 20 H 1.08994 * 109.47107 * 149.96040 * 1 2 3 21 21 H 1.08001 * 125.98992 * 0.02562 * 3 2 1 22 22 H 1.09002 * 109.47120 * 149.69229 * 6 5 4 23 23 H 1.08998 * 109.46862 * 29.70031 * 6 5 4 24 24 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 25 25 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 26 26 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 27 27 H 1.08992 * 109.47150 * 90.00135 * 17 16 5 28 28 H 1.09003 * 109.46880 * 210.00131 * 17 16 5 29 29 H 1.09003 * 109.47270 * 329.99804 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 0.0040 5 6 3.5969 -0.6507 -0.0014 6 6 4.8318 -1.5143 -0.0017 7 6 5.2494 -1.8069 -1.4442 8 6 6.4847 -2.6700 -1.4444 9 1 6.9275 -2.9793 -0.5092 10 6 7.0491 -3.0656 -2.6386 11 7 6.5095 -2.6894 -3.7774 12 14 8.5799 -4.1361 -2.6389 13 1 8.2911 -5.4132 -1.9381 14 1 8.9852 -4.4199 -4.0390 15 1 9.6808 -3.4258 -1.9397 16 7 2.3230 -1.0990 -0.0009 17 6 1.8944 -2.4999 -0.0008 18 1 -0.3632 -0.0008 1.0277 19 1 -0.3633 0.8904 -0.5131 20 1 -0.3633 -0.8896 -0.5144 21 1 1.9865 2.1117 0.0004 22 1 4.6198 -2.4518 0.5124 23 1 5.6397 -0.9931 0.5119 24 1 5.4614 -0.8694 -1.9583 25 1 4.4414 -2.3281 -1.9577 26 1 6.9068 -2.9674 -4.6176 27 1 1.7885 -2.8474 1.0268 28 1 0.9368 -2.5869 -0.5143 29 1 2.6389 -3.1077 -0.5150 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260065731.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:44 Heat of formation + Delta-G solvation = 18.187837 kcal Electronic energy + Delta-G solvation = -11844.625314 eV Core-core repulsion = 9767.261648 eV Total energy + Delta-G solvation = -2077.363666 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.02268 -36.03600 -34.95274 -33.92916 -31.88905 -28.26518 -27.80891 -25.99891 -23.39976 -21.53812 -20.43666 -18.58864 -17.43364 -16.82240 -16.40847 -15.46909 -15.11139 -14.49071 -14.18903 -13.99534 -13.91895 -13.58977 -13.47475 -13.04547 -12.87608 -12.80491 -12.50299 -11.92278 -11.66667 -11.31860 -10.83960 -10.57129 -10.48005 -9.01840 -8.20315 -6.33568 1.11514 1.41948 1.45868 1.53561 1.96363 2.20112 2.42413 3.12899 3.69481 3.89961 3.96511 4.26143 4.36578 4.46019 4.55809 4.62541 4.72700 4.82660 4.95973 4.98023 5.09262 5.44237 5.53028 5.60586 5.78532 5.94167 6.16128 6.33572 6.82544 7.24898 7.36405 8.91509 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.067447 B = 0.007815 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.043110 B = 3582.119445 C = 3671.420520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.035 4.035 3 C -0.065 4.065 4 N -0.539 5.539 5 C 0.198 3.802 6 C -0.017 4.017 7 C 0.045 3.955 8 C -0.543 4.543 9 H 0.070 0.930 10 C 0.001 3.999 11 N -0.935 5.935 12 Si 0.970 3.030 13 H -0.261 1.261 14 H -0.285 1.285 15 H -0.268 1.268 16 N -0.458 5.458 17 C 0.063 3.937 18 H 0.088 0.912 19 H 0.094 0.906 20 H 0.075 0.925 21 H 0.185 0.815 22 H 0.086 0.914 23 H 0.075 0.925 24 H -0.021 1.021 25 H -0.008 1.008 26 H 0.264 0.736 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.287 -0.179 8.073 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.150 4.150 3 C -0.212 4.212 4 N -0.258 5.258 5 C -0.064 4.064 6 C -0.056 4.056 7 C 0.006 3.994 8 C -0.581 4.581 9 H 0.088 0.912 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.794 3.206 13 H -0.185 1.185 14 H -0.211 1.211 15 H -0.193 1.193 16 N -0.140 5.140 17 C -0.078 4.078 18 H 0.107 0.893 19 H 0.113 0.887 20 H 0.094 0.906 21 H 0.202 0.798 22 H 0.104 0.896 23 H 0.093 0.907 24 H -0.003 1.003 25 H 0.011 0.989 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.647 0.152 7.908 14.079 hybrid contribution 0.270 -0.698 -0.516 0.909 sum -11.377 -0.547 7.392 13.579 Atomic orbital electron populations 1.20307 0.83668 1.04441 1.03864 1.21946 0.96396 0.86111 1.10538 1.22534 0.88100 0.99990 1.10614 1.70145 1.24340 1.09531 1.21760 1.23548 0.86977 0.90857 1.05060 1.20001 0.90012 0.96247 0.99375 1.18814 0.95240 0.94498 0.90811 1.21604 1.11751 1.31583 0.93173 0.91224 1.26026 1.00968 0.97710 0.95028 1.70123 1.42362 1.46913 0.98115 0.85426 0.78818 0.79182 0.77162 1.18500 1.21055 1.19286 1.45427 1.06055 1.08570 1.53982 1.22307 1.02996 0.77475 1.05020 0.89346 0.88694 0.90615 0.79786 0.89556 0.90665 1.00252 0.98923 0.92739 0.88263 0.87279 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.17 71.24 0.72 -0.44 15 2 C -0.03 -1.05 6.95 40.95 0.28 -0.77 15 3 C -0.07 -2.32 11.79 83.52 0.98 -1.34 15 4 N -0.54 -24.08 11.25 -188.13 -2.12 -26.19 15 5 C 0.20 8.42 7.16 138.13 0.99 9.41 15 6 C -0.02 -0.77 5.25 29.85 0.16 -0.61 15 7 C 0.04 2.46 4.95 29.85 0.15 2.60 15 8 C -0.54 -31.05 9.11 25.60 0.23 -30.82 15 9 H 0.07 3.72 7.74 -2.91 -0.02 3.70 15 10 C 0.00 0.03 5.46 84.66 0.46 0.49 15 11 N -0.94 -57.95 13.29 21.45 0.28 -57.66 15 12 Si 0.97 44.14 29.54 68.60 2.03 46.16 15 13 H -0.26 -11.11 7.11 99.48 0.71 -10.40 15 14 H -0.29 -12.76 7.11 99.48 0.71 -12.05 15 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 16 N -0.46 -15.57 3.15 -523.06 -1.65 -17.22 15 17 C 0.06 1.56 10.61 127.77 1.36 2.91 15 18 H 0.09 1.26 8.14 -2.39 -0.02 1.25 15 19 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 20 H 0.08 1.16 7.22 -2.39 -0.02 1.14 15 21 H 0.19 5.30 8.06 -2.91 -0.02 5.28 15 22 H 0.09 3.36 7.70 -2.39 -0.02 3.34 15 23 H 0.07 3.39 8.14 -2.39 -0.02 3.37 15 24 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 15 25 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 15 26 H 0.26 15.35 8.31 -92.71 -0.77 14.58 15 27 H 0.10 1.90 8.14 -2.39 -0.02 1.88 15 28 H 0.11 2.01 7.20 -2.39 -0.02 1.99 15 29 H 0.08 2.24 7.66 -2.39 -0.02 2.22 15 Total: -1.00 -73.68 252.75 5.00 -68.68 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.12 Total: 4.79 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 5.34 Total: -18.55 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -3.48 Total: -101.07 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -73.68 5.00 -68.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065731.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.863 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds