Wall clock time and date at job start Mon Mar 30 2020 02:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99860 * 2 1 4 4 H 1.48497 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47294 * 300.00421 * 3 2 1 6 6 H 1.48505 * 109.46989 * 60.00374 * 3 2 1 7 7 C 1.37875 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99969 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.24218 * 60.54893 * 9 7 2 11 11 C 1.54910 * 110.27608 * 298.54887 * 9 7 2 12 12 C 1.55314 * 106.37947 * 244.39255 * 11 9 7 13 13 C 1.53266 * 103.09591 * 23.87046 * 12 11 9 14 14 H 1.08993 * 110.40346 * 75.75350 * 13 12 11 15 15 C 1.51781 * 115.80506 * 202.91712 * 13 12 11 16 16 C 1.53737 * 107.24379 * 177.08380 * 15 13 12 17 17 C 1.52564 * 111.48986 * 302.17673 * 16 15 13 18 18 C 1.54664 * 111.49096 * 54.86442 * 17 16 15 19 19 C 1.51615 * 107.01286 * 302.46351 * 18 17 16 20 20 H 1.09002 * 109.79318 * 305.30391 * 19 18 17 21 21 H 0.96993 * 119.99864 * 359.97438 * 1 2 3 22 22 H 1.08995 * 110.07376 * 125.16328 * 11 9 7 23 23 H 1.08994 * 110.07247 * 3.62112 * 11 9 7 24 24 H 1.09002 * 110.72167 * 142.32112 * 12 11 9 25 25 H 1.09003 * 110.72340 * 265.41967 * 12 11 9 26 26 H 1.09007 * 109.89624 * 296.51592 * 15 13 12 27 27 H 1.08995 * 109.90301 * 57.64234 * 15 13 12 28 28 H 1.08996 * 109.08024 * 62.69939 * 16 15 13 29 29 H 1.09003 * 109.07296 * 181.66561 * 16 15 13 30 30 H 1.08998 * 109.08497 * 175.29810 * 17 16 15 31 31 H 1.08994 * 109.08565 * 294.34604 * 17 16 15 32 32 H 1.09003 * 109.95346 * 183.14153 * 18 17 16 33 33 H 1.09007 * 110.09612 * 61.86266 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6267 -2.5741 -0.8908 11 6 0.3818 -2.6171 1.2762 12 6 0.9487 -3.8172 2.0827 13 6 2.3965 -3.9143 1.5893 14 1 3.0028 -3.1245 2.0326 15 6 3.0619 -5.2683 1.7557 16 6 4.4651 -5.1659 1.1360 17 6 4.3991 -4.7551 -0.3319 18 6 3.6042 -3.4414 -0.5174 19 6 2.2231 -3.6727 0.0636 20 1 1.7712 -4.5512 -0.3970 21 1 -0.4849 0.8400 0.0004 22 1 -0.6570 -2.8057 1.0054 23 1 0.4554 -1.7026 1.8647 24 1 0.9189 -3.6113 3.1527 25 1 0.4005 -4.7306 1.8518 26 1 3.1410 -5.5151 2.8146 27 1 2.4824 -6.0327 1.2380 28 1 5.0449 -4.4257 1.6873 29 1 4.9600 -6.1340 1.2130 30 1 5.4122 -4.6132 -0.7081 31 1 3.9151 -5.5478 -0.9024 32 1 3.5252 -3.2011 -1.5777 33 1 4.0980 -2.6268 0.0126 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260078992.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:45 Heat of formation + Delta-G solvation = -37.226886 kcal Electronic energy + Delta-G solvation = -12906.963646 eV Core-core repulsion = 10930.737361 eV Total energy + Delta-G solvation = -1976.226285 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.97561 -34.35011 -32.20973 -30.67181 -27.45879 -26.76733 -23.83384 -21.59619 -20.21855 -19.19025 -18.74003 -15.82468 -14.72160 -14.29646 -13.99335 -13.71904 -13.27556 -12.62069 -12.48649 -12.08630 -11.49181 -11.28206 -11.02190 -10.88116 -10.51600 -10.43697 -10.29088 -9.89873 -9.83189 -9.49965 -9.46814 -9.11643 -8.73360 -8.42806 -8.25762 -5.91011 -3.92727 3.33698 3.42073 3.45358 4.51308 5.24177 5.29237 5.35583 5.42651 5.79398 5.93114 6.01547 6.05970 6.12227 6.18389 6.22156 6.39036 6.44771 6.56441 6.66675 6.68318 6.81021 6.94753 7.03026 7.11359 7.20405 7.27366 7.41407 7.55800 7.82931 8.04277 8.10032 8.60979 9.11256 9.70708 11.18392 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.042902 B = 0.012821 C = 0.010996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.501091 B = 2183.422798 C = 2545.782041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.050 3.950 10 H 0.022 0.978 11 C -0.092 4.092 12 C -0.120 4.120 13 C -0.091 4.091 14 H 0.073 0.927 15 C -0.107 4.107 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.098 4.098 19 C -0.079 4.079 20 H 0.041 0.959 21 H 0.256 0.744 22 H 0.032 0.968 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.448 -7.889 2.112 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.032 3.968 10 H 0.040 0.960 11 C -0.130 4.130 12 C -0.158 4.158 13 C -0.109 4.109 14 H 0.092 0.908 15 C -0.145 4.145 16 C -0.151 4.151 17 C -0.158 4.158 18 C -0.135 4.135 19 C -0.098 4.098 20 H 0.060 0.940 21 H 0.066 0.934 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.302 -7.767 2.104 9.637 hybrid contribution 0.352 0.999 0.022 1.060 sum 5.654 -6.768 2.126 9.072 Atomic orbital electron populations 1.70005 1.05833 1.26008 1.51197 1.24997 0.94756 0.98856 0.95635 0.86679 0.80251 0.84503 0.77412 1.19852 1.21255 1.21265 1.21362 0.93079 0.90281 1.49486 0.92024 1.19036 0.92167 0.91985 0.93625 0.96025 1.22427 0.97255 0.95453 0.97903 1.22268 0.95806 0.99148 0.98561 1.21804 0.95889 0.95511 0.97702 0.90847 1.21428 0.95847 0.98054 0.99161 1.21489 0.97151 0.99957 0.96522 1.21781 0.99511 0.98711 0.95792 1.21481 0.95987 0.95427 1.00589 1.21673 0.95320 0.98787 0.93994 0.94015 0.93376 0.94916 0.91735 0.93727 0.93583 0.93067 0.92594 0.92571 0.93367 0.93271 0.93106 0.92620 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 12.28 55.43 0.68 -25.30 16 2 C 0.06 1.63 5.07 -17.82 -0.09 1.54 16 3 Si 0.88 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.50 -13.65 8.00 -34.44 -0.28 -13.93 16 8 H 0.06 1.64 5.53 -52.49 -0.29 1.35 16 9 C 0.05 1.26 2.78 -91.01 -0.25 1.01 16 10 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 11 C -0.09 -2.21 5.70 -24.50 -0.14 -2.35 16 12 C -0.12 -2.37 6.44 -25.37 -0.16 -2.54 16 13 C -0.09 -1.73 2.34 -89.80 -0.21 -1.94 16 14 H 0.07 1.51 8.07 -51.93 -0.42 1.09 16 15 C -0.11 -1.69 5.66 -26.97 -0.15 -1.84 16 16 C -0.11 -1.67 5.85 -26.57 -0.16 -1.83 16 17 C -0.12 -1.88 5.87 -26.08 -0.15 -2.03 16 18 C -0.10 -1.87 4.76 -26.56 -0.13 -1.99 16 19 C -0.08 -1.65 2.08 -90.27 -0.19 -1.83 16 20 H 0.04 0.84 7.97 -51.93 -0.41 0.43 16 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.71 7.08 -51.93 -0.37 1.34 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 27 H 0.06 0.86 8.03 -51.93 -0.42 0.44 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.42 6.39 -51.93 -0.33 1.09 16 LS Contribution 250.47 15.07 3.77 3.77 Total: -1.00 -27.88 250.47 -8.07 -35.95 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.60 Total: -3.16 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -1.91 Total: -27.74 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.68 Total: -25.30 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.88 -8.07 -35.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260078992.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.272 kcal (2) G-P(sol) polarization free energy of solvation -27.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds