Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99860 * 2 1 4 4 H 1.48497 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47294 * 300.00421 * 3 2 1 6 6 H 1.48505 * 109.46989 * 60.00374 * 3 2 1 7 7 C 1.37875 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99969 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.24218 * 60.54893 * 9 7 2 11 11 C 1.54910 * 110.27608 * 298.54887 * 9 7 2 12 12 C 1.55314 * 106.37947 * 244.39255 * 11 9 7 13 13 C 1.53266 * 103.09591 * 23.87046 * 12 11 9 14 14 H 1.08993 * 110.40346 * 75.75350 * 13 12 11 15 15 C 1.51781 * 115.80506 * 202.91712 * 13 12 11 16 16 C 1.53737 * 107.24379 * 177.08380 * 15 13 12 17 17 C 1.52564 * 111.48986 * 302.17673 * 16 15 13 18 18 C 1.54664 * 111.49096 * 54.86442 * 17 16 15 19 19 C 1.51615 * 107.01286 * 302.46351 * 18 17 16 20 20 H 1.09002 * 109.79318 * 305.30391 * 19 18 17 21 21 H 0.96993 * 119.99864 * 359.97438 * 1 2 3 22 22 H 1.08995 * 110.07376 * 125.16328 * 11 9 7 23 23 H 1.08994 * 110.07247 * 3.62112 * 11 9 7 24 24 H 1.09002 * 110.72167 * 142.32112 * 12 11 9 25 25 H 1.09003 * 110.72340 * 265.41967 * 12 11 9 26 26 H 1.09007 * 109.89624 * 296.51592 * 15 13 12 27 27 H 1.08995 * 109.90301 * 57.64234 * 15 13 12 28 28 H 1.08996 * 109.08024 * 62.69939 * 16 15 13 29 29 H 1.09003 * 109.07296 * 181.66561 * 16 15 13 30 30 H 1.08998 * 109.08497 * 175.29810 * 17 16 15 31 31 H 1.08994 * 109.08565 * 294.34604 * 17 16 15 32 32 H 1.09003 * 109.95346 * 183.14153 * 18 17 16 33 33 H 1.09007 * 110.09612 * 61.86266 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6267 -2.5741 -0.8908 11 6 0.3818 -2.6171 1.2762 12 6 0.9487 -3.8172 2.0827 13 6 2.3965 -3.9143 1.5893 14 1 3.0028 -3.1245 2.0326 15 6 3.0619 -5.2683 1.7557 16 6 4.4651 -5.1659 1.1360 17 6 4.3991 -4.7551 -0.3319 18 6 3.6042 -3.4414 -0.5174 19 6 2.2231 -3.6727 0.0636 20 1 1.7712 -4.5512 -0.3970 21 1 -0.4849 0.8400 0.0004 22 1 -0.6570 -2.8057 1.0054 23 1 0.4554 -1.7026 1.8647 24 1 0.9189 -3.6113 3.1527 25 1 0.4005 -4.7306 1.8518 26 1 3.1410 -5.5151 2.8146 27 1 2.4824 -6.0327 1.2380 28 1 5.0449 -4.4257 1.6873 29 1 4.9600 -6.1340 1.2130 30 1 5.4122 -4.6132 -0.7081 31 1 3.9151 -5.5478 -0.9024 32 1 3.5252 -3.2011 -1.5777 33 1 4.0980 -2.6268 0.0126 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260078992.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = -51.409225 kcal Electronic energy + Delta-G solvation = -12907.578638 eV Core-core repulsion = 10930.737361 eV Total energy + Delta-G solvation = -1976.841277 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.56449 -35.99163 -34.13165 -32.27001 -29.04749 -28.54724 -25.80083 -23.10138 -21.55638 -20.82347 -20.58559 -17.85029 -16.64139 -15.86481 -15.62198 -15.22618 -14.71322 -14.35308 -14.11984 -13.74291 -13.11090 -12.99449 -12.81149 -12.48986 -12.30021 -12.09250 -11.85786 -11.60396 -11.41003 -11.19416 -11.12484 -10.69637 -10.53708 -10.40306 -10.28390 -8.06715 -6.14365 1.38508 1.40607 1.51404 2.45315 3.23959 3.84889 3.95629 4.03744 4.33334 4.46202 4.55004 4.64764 4.76927 4.80632 4.83522 4.92981 5.04173 5.09803 5.17271 5.27237 5.28946 5.42266 5.44091 5.49366 5.53579 5.59870 5.71906 5.76352 5.83244 6.00727 6.05763 6.50915 6.98665 7.52455 9.02785 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.042902 B = 0.012821 C = 0.010996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.501091 B = 2183.422798 C = 2545.782041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.039 3.961 10 H -0.019 1.019 11 C -0.089 4.089 12 C -0.111 4.111 13 C -0.082 4.082 14 H 0.054 0.946 15 C -0.102 4.102 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.097 4.097 19 C -0.079 4.079 20 H 0.049 0.951 21 H 0.256 0.744 22 H 0.016 0.984 23 H 0.030 0.970 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.273 -9.408 2.840 12.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.021 3.979 10 H -0.001 1.001 11 C -0.127 4.127 12 C -0.148 4.148 13 C -0.100 4.100 14 H 0.073 0.927 15 C -0.139 4.139 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.135 4.135 19 C -0.097 4.097 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.035 0.965 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.143 -9.295 2.833 12.060 hybrid contribution -0.270 1.489 -0.246 1.533 sum 6.873 -7.806 2.587 10.718 Atomic orbital electron populations 1.70142 1.07320 1.26672 1.52467 1.25782 0.95549 1.02345 0.95621 0.85672 0.79396 0.80344 0.77282 1.18802 1.21062 1.21014 1.21701 0.93364 0.91325 1.48509 0.91773 1.19072 0.92904 0.93539 0.92379 1.00069 1.22268 0.96546 0.96167 0.97718 1.22200 0.96316 0.97689 0.98632 1.21731 0.95270 0.97480 0.95564 0.92727 1.21404 0.96114 0.95509 1.00868 1.21502 0.96648 1.01561 0.95308 1.21722 0.99804 0.96448 0.97124 1.21431 0.95431 0.97311 0.99307 1.21590 0.95257 0.96799 0.96072 0.93292 0.93525 0.96500 0.95082 0.92256 0.91523 0.90990 0.91628 0.92759 0.90282 0.91491 0.92084 0.93905 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 12.28 21.45 0.26 -55.63 16 2 C 0.00 0.25 5.07 84.65 0.43 0.68 16 3 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 4 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 6 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.51 -28.41 8.00 25.60 0.20 -28.21 16 8 H 0.06 3.47 5.53 -2.91 -0.02 3.45 16 9 C 0.04 2.05 2.78 -11.05 -0.03 2.02 16 10 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 11 C -0.09 -4.38 5.70 32.04 0.18 -4.20 16 12 C -0.11 -4.23 6.44 31.48 0.20 -4.03 16 13 C -0.08 -2.98 2.34 -10.27 -0.02 -3.00 16 14 H 0.05 2.19 8.07 -2.39 -0.02 2.17 16 15 C -0.10 -2.79 5.66 30.44 0.17 -2.61 16 16 C -0.11 -2.83 5.85 30.70 0.18 -2.65 16 17 C -0.11 -3.17 5.87 31.02 0.18 -2.99 16 18 C -0.10 -3.64 4.76 30.71 0.15 -3.49 16 19 C -0.08 -3.24 2.08 -10.57 -0.02 -3.26 16 20 H 0.05 1.93 7.97 -2.39 -0.02 1.91 16 21 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 22 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.03 1.70 7.08 -2.39 -0.02 1.68 16 24 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.07 1.71 8.03 -2.39 -0.02 1.69 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 2.08 6.39 -2.38 -0.02 2.06 16 Total: -1.00 -61.46 250.47 4.96 -56.50 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.05 Total: 4.00 kcal Atomic # 6 Polarization: -53.37 SS G_CDS: 1.62 Total: -51.75 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.26 Total: -55.63 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -61.46 4.96 -56.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260078992.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.090 kcal (2) G-P(sol) polarization free energy of solvation -61.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds