Wall clock time and date at job start Mon Mar 30 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34848 * 125.89137 * 2 1 4 4 C 1.40884 * 107.41955 * 179.80751 * 3 2 1 5 5 C 1.50694 * 126.29595 * 180.23997 * 4 3 2 6 6 H 1.09004 * 109.47223 * 0.19233 * 5 4 3 7 7 C 1.50695 * 109.47487 * 240.19223 * 5 4 3 8 8 H 1.07998 * 120.00058 * 268.78418 * 7 5 4 9 9 C 1.37878 * 119.99909 * 88.78343 * 7 5 4 10 10 N 1.31506 * 120.00409 * 6.63850 * 9 7 5 11 11 Si 1.86808 * 119.99732 * 186.63751 * 9 7 5 12 12 H 1.48497 * 109.46736 * 60.00254 * 11 9 7 13 13 H 1.48498 * 109.46813 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47240 * 299.99735 * 11 9 7 15 15 C 1.53005 * 109.47380 * 120.18720 * 5 4 3 16 16 N 1.46895 * 109.47319 * 185.32014 * 15 5 4 17 17 C 1.34857 * 107.41648 * 0.38438 * 4 3 2 18 18 N 1.36340 * 108.21569 * 359.61747 * 17 4 3 19 19 H 0.97008 * 125.63620 * 180.26526 * 18 17 4 20 20 H 1.08999 * 109.47174 * 269.97370 * 1 2 3 21 21 H 1.09003 * 109.47512 * 29.98032 * 1 2 3 22 22 H 1.09005 * 109.47019 * 149.98007 * 1 2 3 23 23 H 1.08002 * 126.29083 * 0.02562 * 3 2 1 24 24 H 0.97005 * 120.00735 * 179.97438 * 10 9 7 25 25 H 1.08994 * 109.47421 * 305.32456 * 15 5 4 26 26 H 1.09006 * 109.46699 * 65.32190 * 15 5 4 27 27 H 1.00897 * 110.99950 * 56.04888 * 16 15 5 28 28 H 1.00899 * 110.99730 * 180.02562 * 16 15 5 29 29 H 1.07998 * 125.89097 * 179.88779 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0924 0.0000 4 6 3.6338 0.6461 0.0045 5 6 4.8647 1.5154 0.0112 6 1 4.5686 2.5645 0.0156 7 6 5.6875 1.2309 -1.2188 8 1 6.4619 0.4787 -1.1883 9 6 5.4516 1.9308 -2.3830 10 7 4.6015 2.9341 -2.3864 11 14 6.3398 1.4538 -3.9557 12 1 6.0053 0.0503 -4.3068 13 1 5.9148 2.3549 -5.0569 14 1 7.8057 1.5777 -3.7534 15 6 5.6947 1.2147 1.2609 16 7 6.8262 2.1486 1.3336 17 6 3.6090 -0.7022 -0.0015 18 7 2.3063 -1.1045 -0.0010 19 1 1.9989 -2.0246 -0.0009 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.9671 2.1207 0.0004 24 1 4.4358 3.4268 -3.2055 25 1 5.0713 1.3296 2.1475 26 1 6.0699 0.1925 1.2105 27 1 6.5069 3.1056 1.3163 28 1 7.3904 1.9701 2.1509 29 1 4.4721 -1.3514 -0.0019 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088131.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:47 Heat of formation + Delta-G solvation = 12.905060 kcal Electronic energy + Delta-G solvation = -12101.785483 eV Core-core repulsion = 10024.192739 eV Total energy + Delta-G solvation = -2077.592744 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.71030 -36.86036 -34.10705 -32.45128 -31.92386 -29.26593 -26.42878 -25.75245 -22.79177 -20.85960 -19.83813 -18.20889 -17.91962 -16.54498 -16.01286 -15.33997 -15.03564 -14.61479 -14.32968 -13.98335 -13.45403 -13.27846 -13.16242 -12.84244 -12.73384 -12.51653 -12.32254 -12.13331 -11.34185 -10.84968 -10.39597 -9.25279 -9.14198 -8.48499 -7.92492 -5.96194 1.43640 1.45520 1.51911 1.62741 2.43661 2.57786 2.75344 3.39462 4.07424 4.31585 4.52956 4.65738 4.72648 4.77768 4.86045 4.90169 5.15167 5.25577 5.30501 5.60709 5.79881 5.90649 6.03872 6.36252 6.46892 6.60933 6.71404 6.94235 7.11496 7.18166 7.64362 9.14713 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.029153 B = 0.013796 C = 0.010993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.219677 B = 2029.076404 C = 2546.449360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.002 3.998 3 C -0.232 4.232 4 C -0.132 4.132 5 C 0.097 3.903 6 H 0.015 0.985 7 C -0.476 4.476 8 H 0.045 0.955 9 C 0.010 3.990 10 N -0.925 5.925 11 Si 0.942 3.058 12 H -0.276 1.276 13 H -0.291 1.291 14 H -0.273 1.273 15 C 0.092 3.908 16 N -0.844 5.844 17 C -0.040 4.040 18 N -0.552 5.552 19 H 0.422 0.578 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.103 0.897 24 H 0.252 0.748 25 H 0.004 0.996 26 H 0.055 0.945 27 H 0.335 0.665 28 H 0.339 0.661 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.517 -7.216 6.044 10.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 C -0.257 4.257 4 C -0.139 4.139 5 C 0.077 3.923 6 H 0.033 0.967 7 C -0.515 4.515 8 H 0.063 0.937 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.769 3.231 12 H -0.202 1.202 13 H -0.217 1.217 14 H -0.199 1.199 15 C -0.038 4.038 16 N -0.373 5.373 17 C -0.169 4.169 18 N -0.150 5.150 19 H 0.261 0.739 20 H 0.101 0.899 21 H 0.092 0.908 22 H 0.098 0.902 23 H 0.122 0.878 24 H 0.061 0.939 25 H 0.022 0.978 26 H 0.073 0.927 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.390 -7.579 5.238 10.674 hybrid contribution 0.039 0.190 -0.229 0.300 sum -5.351 -7.390 5.009 10.408 Atomic orbital electron populations 1.20283 0.85793 1.03541 1.03229 1.20646 0.94547 0.86050 1.09873 1.20676 0.93825 0.97195 1.14030 1.20188 0.95201 0.94140 1.04371 1.17251 0.89040 0.93628 0.92354 0.96711 1.21057 1.15861 1.18972 0.95562 0.93678 1.25593 0.96391 0.95090 1.01592 1.70075 1.37936 1.21154 1.27450 0.85870 0.79167 0.77816 0.80250 1.20182 1.21662 1.19865 1.21652 0.90764 0.95711 0.95717 1.58457 1.24482 1.07257 1.47140 1.21476 0.86365 0.95436 1.13644 1.41661 1.05308 1.08045 1.59954 0.73948 0.89911 0.90833 0.90212 0.87843 0.93873 0.97768 0.92661 0.85260 0.84900 0.81927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.76 10.42 71.24 0.74 -1.01 15 2 C 0.00 0.08 7.16 41.08 0.29 0.37 15 3 C -0.23 -10.60 10.70 22.14 0.24 -10.36 15 4 C -0.13 -6.35 4.86 -20.00 -0.10 -6.45 15 5 C 0.10 5.06 2.36 -12.29 -0.03 5.03 15 6 H 0.01 0.87 7.39 -2.38 -0.02 0.86 15 7 C -0.48 -27.09 7.87 25.60 0.20 -26.89 15 8 H 0.04 2.56 7.82 -2.91 -0.02 2.54 15 9 C 0.01 0.60 5.45 84.66 0.46 1.06 15 10 N -0.93 -57.09 12.86 21.45 0.28 -56.82 15 11 Si 0.94 46.47 29.54 68.60 2.03 48.50 15 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 15 13 H -0.29 -14.19 7.11 99.48 0.71 -13.48 15 14 H -0.27 -13.13 7.11 99.48 0.71 -12.42 15 15 C 0.09 4.01 6.00 86.31 0.52 4.53 15 16 N -0.84 -33.94 9.35 -186.72 -1.75 -35.69 15 17 C -0.04 -1.64 11.46 83.22 0.95 -0.68 15 18 N -0.55 -18.26 6.07 -182.77 -1.11 -19.37 15 19 H 0.42 10.03 8.96 -92.70 -0.83 9.20 15 20 H 0.08 1.72 8.14 -2.39 -0.02 1.70 15 21 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.08 1.57 8.14 -2.38 -0.02 1.55 15 23 H 0.10 4.95 8.06 -2.91 -0.02 4.93 15 24 H 0.25 15.02 8.31 -92.70 -0.77 14.25 15 25 H 0.00 0.17 8.14 -2.39 -0.02 0.16 15 26 H 0.05 2.33 8.14 -2.38 -0.02 2.31 15 27 H 0.34 13.50 8.99 -89.70 -0.81 12.69 15 28 H 0.34 10.89 9.08 -89.69 -0.81 10.07 15 29 H 0.16 6.08 8.06 -2.91 -0.02 6.05 15 Total: -1.00 -69.57 252.81 1.44 -68.13 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -1.29 Total: 29.67 kcal Atomic # 6 Polarization: -37.69 SS G_CDS: 3.28 Total: -34.41 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -2.58 Total: -111.88 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -69.57 1.44 -68.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088131.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.031 kcal (2) G-P(sol) polarization free energy of solvation -69.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds