Wall clock time and date at job start Mon Mar 30 2020 02:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34127 * 125.99131 * 2 1 4 4 C 1.30499 * 109.25723 * 180.24518 * 3 2 1 5 5 C 1.50704 * 125.65319 * 179.77306 * 4 3 2 6 6 N 1.35043 * 108.69832 * 359.75383 * 4 3 2 7 7 C 1.46504 * 126.39874 * 180.02562 * 6 4 3 8 8 C 1.34670 * 125.99013 * 179.81477 * 2 1 3 9 9 C 1.50697 * 126.58727 * 0.02966 * 8 2 1 10 10 C 1.50700 * 109.47266 * 269.68340 * 9 8 2 11 11 H 1.07999 * 119.99988 * 0.02562 * 10 9 8 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47163 * 59.99902 * 14 12 10 16 16 H 1.48495 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47290 * 299.99897 * 14 12 10 18 18 H 1.08995 * 109.47099 * 270.18370 * 1 2 3 19 19 H 1.09002 * 109.47055 * 30.17940 * 1 2 3 20 20 H 1.08998 * 109.46790 * 150.17814 * 1 2 3 21 21 H 1.09001 * 109.47086 * 269.97563 * 5 4 3 22 22 H 1.09004 * 109.46657 * 29.97389 * 5 4 3 23 23 H 1.08998 * 109.47087 * 149.97153 * 5 4 3 24 24 H 1.08994 * 109.46932 * 269.99673 * 7 6 4 25 25 H 1.09006 * 109.46959 * 29.99589 * 7 6 4 26 26 H 1.08998 * 109.47267 * 149.99315 * 7 6 4 27 27 H 1.09004 * 109.47205 * 149.68433 * 9 8 2 28 28 H 1.08997 * 109.47395 * 29.68926 * 9 8 2 29 29 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 -0.0053 5 6 4.7387 1.6293 -0.0119 6 7 3.5912 -0.6401 -0.0033 7 6 4.7996 -1.4686 -0.0072 8 6 2.2984 -1.0896 0.0035 9 6 1.8472 -2.5275 0.0075 10 6 1.7037 -3.0050 1.4297 11 1 1.9174 -2.3342 2.2487 12 6 1.2995 -4.2983 1.6852 13 7 1.0340 -5.1134 0.6879 14 14 1.1209 -4.8899 3.4480 15 1 0.1148 -4.0540 4.1512 16 1 0.6764 -6.3068 3.4519 17 1 2.4289 -4.7790 4.1423 18 1 -0.3633 0.0033 1.0276 19 1 -0.3633 0.8884 -0.5166 20 1 -0.3633 -0.8916 -0.5111 21 1 5.0221 1.8494 -1.0412 22 1 4.4855 2.5569 0.5015 23 1 5.5719 1.1469 0.4991 24 1 5.0948 -1.6757 -1.0357 25 1 5.6047 -0.9391 0.5024 26 1 4.5982 -2.4072 0.5091 27 1 2.5851 -3.1413 -0.5091 28 1 0.8868 -2.6084 -0.5016 29 1 0.7500 -6.0233 0.8677 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088361.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:46 Heat of formation + Delta-G solvation = 18.670374 kcal Electronic energy + Delta-G solvation = -12128.413252 eV Core-core repulsion = 10051.070511 eV Total energy + Delta-G solvation = -2077.342741 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.93851 -35.62058 -35.17777 -33.49620 -30.58219 -30.10480 -27.86035 -26.09357 -23.99395 -20.87995 -20.36679 -18.58716 -17.21626 -16.71522 -16.47923 -15.16572 -14.69884 -14.42047 -14.24320 -13.88828 -13.61545 -13.40663 -13.26479 -13.20395 -12.83036 -12.70527 -12.64630 -12.57234 -11.93818 -11.62043 -10.80839 -10.58659 -10.22771 -8.84337 -8.20132 -6.36141 1.26017 1.39471 1.41349 1.49909 2.08391 2.19819 2.40562 3.08176 3.64896 3.99674 4.11027 4.40204 4.52435 4.54057 4.64035 4.72552 4.81099 4.87563 4.90481 5.07124 5.14021 5.26515 5.43913 5.68672 5.78551 5.95640 6.15322 6.55261 6.72573 7.27629 7.33338 8.85837 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.042306 B = 0.010974 C = 0.009970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.690619 B = 2550.806849 C = 2807.802243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.050 4.050 3 N -0.524 5.524 4 C 0.177 3.823 5 C -0.054 4.054 6 N -0.462 5.462 7 C 0.071 3.929 8 C 0.000 4.000 9 C 0.104 3.896 10 C -0.527 4.527 11 H 0.044 0.956 12 C 0.015 3.985 13 N -0.924 5.924 14 Si 0.961 3.039 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.268 1.268 18 H 0.058 0.942 19 H 0.073 0.927 20 H 0.060 0.940 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.006 0.994 28 H 0.020 0.980 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 7.590 -0.617 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.177 4.177 3 N -0.246 5.246 4 C -0.084 4.084 5 C -0.112 4.112 6 N -0.146 5.146 7 C -0.071 4.071 8 C -0.116 4.116 9 C 0.066 3.934 10 C -0.565 4.565 11 H 0.062 0.938 12 C -0.184 4.184 13 N -0.563 5.563 14 Si 0.786 3.214 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.193 1.193 18 H 0.077 0.923 19 H 0.091 0.909 20 H 0.079 0.921 21 H 0.112 0.888 22 H 0.109 0.891 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.135 0.865 26 H 0.090 0.910 27 H 0.025 0.975 28 H 0.038 0.962 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.553 8.129 -0.664 11.116 hybrid contribution -0.116 -1.534 0.712 1.695 sum 7.437 6.595 0.048 9.940 Atomic orbital electron populations 1.19846 0.87371 1.01824 1.01609 1.20704 0.97225 0.88352 1.11373 1.69951 1.01033 1.30835 1.22735 1.24043 0.96097 0.82099 1.06190 1.20273 0.89975 0.96469 1.04517 1.45246 1.06923 1.07416 1.54973 1.22184 0.84793 0.95827 1.04290 1.21732 0.83972 0.98246 1.07625 1.17428 0.95290 0.84125 0.96605 1.21163 1.46504 0.96881 0.91986 0.93771 1.25790 0.94514 0.96622 1.01517 1.70044 1.46301 1.07016 1.32976 0.85558 0.78893 0.77375 0.79587 1.19733 1.20251 1.19346 0.92313 0.90851 0.92125 0.88832 0.89070 0.88712 0.89483 0.86481 0.91037 0.97538 0.96185 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.99 10.22 71.24 0.73 -1.27 15 2 C -0.05 -2.32 7.09 41.39 0.29 -2.02 15 3 N -0.52 -22.70 11.25 -176.28 -1.98 -24.68 15 4 C 0.18 6.49 7.90 138.13 1.09 7.58 15 5 C -0.05 -1.22 10.19 71.24 0.73 -0.50 15 6 N -0.46 -18.19 3.15 -523.05 -1.65 -19.84 15 7 C 0.07 2.09 10.66 127.77 1.36 3.45 15 8 C 0.00 -0.02 6.14 40.95 0.25 0.23 15 9 C 0.10 5.55 4.87 29.10 0.14 5.69 15 10 C -0.53 -29.89 9.09 25.60 0.23 -29.65 15 11 H 0.04 2.55 7.74 -2.91 -0.02 2.52 15 12 C 0.01 0.82 5.46 84.66 0.46 1.28 15 13 N -0.92 -54.03 13.29 21.45 0.28 -53.75 15 14 Si 0.96 43.63 29.54 68.60 2.03 45.66 15 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 18 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 19 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 20 H 0.06 2.51 7.16 -2.39 -0.02 2.49 15 21 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.09 1.94 8.14 -2.38 -0.02 1.92 15 23 H 0.09 1.61 7.07 -2.39 -0.02 1.60 15 24 H 0.09 2.21 8.14 -2.39 -0.02 2.19 15 25 H 0.12 2.44 7.05 -2.38 -0.02 2.42 15 26 H 0.07 2.48 7.81 -2.39 -0.02 2.46 15 27 H 0.01 0.35 7.87 -2.38 -0.02 0.34 15 28 H 0.02 1.14 7.17 -2.39 -0.02 1.13 15 29 H 0.27 14.70 8.31 -92.71 -0.77 13.93 15 Total: -1.00 -69.15 251.05 5.09 -64.05 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.13 Total: 3.77 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 5.29 Total: -15.20 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -3.35 Total: -98.27 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -69.15 5.09 -64.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088361.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.722 kcal (2) G-P(sol) polarization free energy of solvation -69.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds