Wall clock time and date at job start Mon Mar 30 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46852 * 110.99412 * 2 1 4 4 C 1.53038 * 109.51870 * 185.84437 * 3 2 1 5 5 C 1.53119 * 109.27882 * 300.81814 * 4 3 2 6 6 H 1.09002 * 109.52432 * 177.56139 * 5 4 3 7 7 C 1.47201 * 109.57518 * 297.71984 * 5 4 3 8 8 N 4.25291 * 119.61344 * 62.12321 * 2 1 3 9 9 C 1.53117 * 109.15738 * 57.65786 * 5 4 3 10 10 H 1.08998 * 109.50586 * 62.29144 * 9 5 4 11 11 C 1.50703 * 109.50171 * 182.36791 * 9 5 4 12 12 H 1.08004 * 119.99943 * 359.97438 * 11 9 5 13 13 C 1.37875 * 120.00241 * 180.02562 * 11 9 5 14 14 N 1.31514 * 119.99787 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00238 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47234 * 59.99405 * 15 13 11 17 17 H 1.48502 * 109.47262 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46963 * 299.99475 * 15 13 11 19 19 C 1.46845 * 111.00532 * 124.20993 * 2 1 3 20 20 H 1.08997 * 109.46942 * 295.78387 * 1 2 3 21 21 H 1.08993 * 109.47765 * 55.78676 * 1 2 3 22 22 H 1.09005 * 109.46991 * 175.79296 * 1 2 3 23 23 H 1.09000 * 109.45912 * 305.85743 * 3 2 1 24 24 H 1.08990 * 109.46263 * 65.82793 * 3 2 1 25 25 H 1.09008 * 109.50069 * 180.87836 * 4 3 2 26 26 H 1.08998 * 109.50473 * 60.76141 * 4 3 2 27 27 H 0.97004 * 119.99967 * 179.97438 * 14 13 11 28 28 H 1.09004 * 109.45875 * 54.14353 * 19 2 1 29 29 H 1.08999 * 109.45709 * 294.17753 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 -0.1469 5 6 4.1188 0.5372 1.0142 6 1 5.1998 0.4716 0.8903 7 6 3.8094 1.2098 2.2865 8 7 3.5706 1.7288 3.2683 9 6 3.5182 -0.8713 1.0206 10 1 3.7815 -1.3834 0.0952 11 6 4.0607 -1.6442 2.1952 12 1 4.7638 -1.1784 2.8698 13 6 3.6602 -2.9462 2.4079 14 7 2.8044 -3.5135 1.5862 15 14 4.3331 -3.9044 3.8633 16 1 3.9726 -3.2076 5.1241 17 1 3.7501 -5.2702 3.8690 18 1 5.8112 -3.9972 3.7542 19 6 1.9954 -0.7707 1.1337 20 1 -0.3633 0.4470 0.9253 21 1 -0.3634 0.5778 -0.8497 22 1 -0.3633 -1.0249 -0.0754 23 1 1.5632 1.9257 -0.8330 24 1 1.7324 1.8608 0.9375 25 1 3.9098 2.3515 -0.1312 26 1 3.7812 0.8569 -1.0907 27 1 2.5229 -4.4297 1.7356 28 1 1.5636 -1.7715 1.1242 29 1 1.7326 -0.2708 2.0659 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260131279.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:55 Heat of formation + Delta-G solvation = 1.454468 kcal Electronic energy + Delta-G solvation = -12483.118331 eV Core-core repulsion = 10405.029052 eV Total energy + Delta-G solvation = -2078.089279 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.26511 -37.05152 -35.35827 -33.97081 -31.41537 -27.84664 -27.07978 -24.03105 -23.14894 -21.55832 -18.54178 -17.25403 -16.84674 -16.24824 -15.85625 -15.37329 -15.06119 -14.86360 -14.27121 -13.83129 -13.30495 -13.24806 -13.06058 -12.88424 -12.61714 -12.56864 -12.23353 -12.08873 -11.99433 -11.60800 -10.91311 -10.77977 -10.46366 -9.09828 -8.11331 -6.23863 1.40099 1.42297 1.48461 1.98526 2.00310 2.41669 3.09750 3.27750 3.40361 4.08625 4.16380 4.38514 4.53638 4.59899 4.69622 4.83615 4.87295 4.92434 5.02577 5.14914 5.24517 5.33995 5.57184 5.78920 5.91025 6.16932 6.40721 6.47081 6.78744 6.87826 7.44406 8.92578 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.036813 B = 0.014318 C = 0.011780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.410532 B = 1955.139397 C = 2376.246020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.549 5.549 3 C 0.050 3.950 4 C -0.098 4.098 5 C 0.000 4.000 6 H 0.127 0.873 7 C 0.259 3.741 8 N -0.518 5.518 9 C 0.065 3.935 10 H 0.045 0.955 11 C -0.537 4.537 12 H 0.048 0.952 13 C 0.025 3.975 14 N -0.905 5.905 15 Si 0.940 3.060 16 H -0.287 1.287 17 H -0.281 1.281 18 H -0.265 1.265 19 C 0.076 3.924 20 H 0.007 0.993 21 H 0.090 0.910 22 H 0.059 0.941 23 H 0.101 0.899 24 H 0.003 0.997 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.263 0.737 28 H 0.077 0.923 29 H -0.023 1.023 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 6.261 -6.337 8.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.273 5.273 3 C -0.078 4.078 4 C -0.137 4.137 5 C -0.021 4.021 6 H 0.145 0.855 7 C -0.057 4.057 8 N -0.196 5.196 9 C 0.045 3.955 10 H 0.063 0.937 11 C -0.575 4.575 12 H 0.066 0.934 13 C -0.175 4.175 14 N -0.543 5.543 15 Si 0.766 3.234 16 H -0.214 1.214 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.052 4.052 20 H 0.025 0.975 21 H 0.108 0.892 22 H 0.077 0.923 23 H 0.119 0.881 24 H 0.021 0.979 25 H 0.114 0.886 26 H 0.124 0.876 27 H 0.072 0.928 28 H 0.095 0.905 29 H -0.005 1.005 Dipole moment (debyes) X Y Z Total from point charges -0.682 6.644 -5.321 8.539 hybrid contribution -0.131 -0.723 1.664 1.819 sum -0.813 5.922 -3.657 7.007 Atomic orbital electron populations 1.22333 0.87590 1.01952 1.00043 1.62101 1.07730 1.13464 1.44032 1.22231 0.96627 0.89196 0.99759 1.21672 0.93659 1.00782 0.97539 1.19506 1.03376 0.95024 0.84208 0.85507 1.29688 0.90768 0.90593 0.94604 1.81006 1.11732 1.13931 1.12919 1.18654 0.90646 0.89101 0.97097 0.93738 1.21407 1.26387 0.97865 1.11877 0.93385 1.25546 0.95240 0.98516 0.98217 1.69953 1.32687 1.13890 1.37783 0.85896 0.79398 0.77967 0.80114 1.21371 1.20586 1.19028 1.22107 0.98628 0.97248 0.87252 0.97482 0.89162 0.92257 0.88082 0.97861 0.88583 0.87637 0.92774 0.90482 1.00524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.59 127.69 1.22 2.16 15 2 N -0.55 -20.47 4.91 -922.59 -4.53 -25.00 15 3 C 0.05 1.53 5.26 86.32 0.45 1.99 15 4 C -0.10 -2.70 5.57 30.65 0.17 -2.53 15 5 C 0.00 0.01 2.63 -12.52 -0.03 -0.02 15 6 H 0.13 3.96 8.14 -2.39 -0.02 3.95 15 7 C 0.26 10.71 11.30 89.44 1.01 11.72 15 8 N -0.52 -23.50 18.54 20.01 0.37 -23.12 15 9 C 0.07 2.97 2.04 -11.49 -0.02 2.94 15 10 H 0.04 2.15 8.14 -2.39 -0.02 2.13 15 11 C -0.54 -28.05 7.96 25.60 0.20 -27.85 15 12 H 0.05 2.54 7.33 -2.91 -0.02 2.52 15 13 C 0.03 1.35 5.31 84.65 0.45 1.79 15 14 N -0.90 -49.81 11.35 21.45 0.24 -49.57 15 15 Si 0.94 43.15 29.54 68.60 2.03 45.18 15 16 H -0.29 -13.55 7.11 99.48 0.71 -12.84 15 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 19 C 0.08 3.51 4.31 86.32 0.37 3.88 15 20 H 0.01 0.22 8.14 -2.39 -0.02 0.20 15 21 H 0.09 2.28 8.09 -2.39 -0.02 2.26 15 22 H 0.06 1.97 8.14 -2.38 -0.02 1.95 15 23 H 0.10 2.44 8.09 -2.39 -0.02 2.42 15 24 H 0.00 0.11 7.32 -2.39 -0.02 0.09 15 25 H 0.10 2.05 8.14 -2.38 -0.02 2.03 15 26 H 0.11 2.60 8.14 -2.39 -0.02 2.58 15 27 H 0.26 13.92 8.31 -92.71 -0.77 13.15 15 28 H 0.08 4.08 6.09 -2.38 -0.01 4.06 15 29 H -0.02 -1.21 7.32 -2.39 -0.02 -1.22 15 Total: -1.00 -61.04 241.00 3.06 -57.98 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: 1.12 Total: 0.44 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 3.83 Total: -5.91 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -3.92 Total: -97.69 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -61.04 3.06 -57.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260131279.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.435 kcal (2) G-P(sol) polarization free energy of solvation -61.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds