Wall clock time and date at job start Mon Mar 30 2020 02:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47110 * 2 1 4 4 C 1.52998 * 109.47203 * 120.00070 * 2 1 3 5 5 C 1.50704 * 109.47265 * 175.00008 * 4 2 1 6 6 N 1.36103 * 126.81134 * 265.02357 * 5 4 2 7 7 H 0.96993 * 126.10898 * 0.02562 * 6 5 4 8 8 C 1.35970 * 107.77560 * 179.97438 * 6 5 4 9 9 N 1.30149 * 109.59457 * 0.23334 * 8 6 5 10 10 C 1.35966 * 109.13667 * 359.62887 * 9 8 6 11 11 C 1.41220 * 126.44065 * 180.14944 * 10 9 8 12 12 H 1.08006 * 119.99951 * 180.25278 * 11 10 9 13 13 C 1.39717 * 120.00326 * 0.25253 * 11 10 9 14 14 N 1.31021 * 119.99654 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00443 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46784 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47062 * 119.99801 * 15 13 11 18 18 H 1.48501 * 109.47171 * 240.00289 * 15 13 11 19 19 H 1.09005 * 109.46884 * 300.00088 * 1 2 3 20 20 H 1.09001 * 109.47133 * 60.00026 * 1 2 3 21 21 H 1.09001 * 109.47149 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47309 * 240.00166 * 2 1 3 23 23 H 1.08994 * 109.46875 * 60.00286 * 3 2 1 24 24 H 1.08999 * 109.46730 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47101 * 299.99994 * 3 2 1 26 26 H 1.09001 * 109.47425 * 54.99748 * 4 2 1 27 27 H 1.09003 * 109.47415 * 294.99615 * 4 2 1 28 28 H 1.08002 * 125.19630 * 179.97438 * 8 6 5 29 29 H 0.97002 * 119.99777 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.8294 1.1889 6 7 4.2656 -1.8851 0.7260 7 1 3.9059 -2.7130 0.3710 8 6 5.5829 -1.5713 0.8491 9 7 5.7020 -0.3831 1.3667 10 6 4.4636 0.1299 1.5947 11 6 4.1687 1.3967 2.1448 12 1 3.1412 1.6987 2.2849 13 6 5.2060 2.2595 2.5077 14 7 6.4524 1.8934 2.3373 15 14 4.8160 3.9348 3.2360 16 1 3.3434 4.1053 3.3247 17 1 5.4080 4.0341 4.5942 18 1 5.3863 4.9966 2.3685 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6054 -1.7198 1.2952 27 1 1.7517 -0.1583 2.1370 28 1 6.4046 -2.2119 0.5650 29 1 7.1726 2.4922 2.5896 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260345907.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:08 Heat of formation + Delta-G solvation = 11.889716 kcal Electronic energy + Delta-G solvation = -12334.917164 eV Core-core repulsion = 10257.280391 eV Total energy + Delta-G solvation = -2077.636773 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.71824 -37.02388 -35.15699 -32.45589 -30.92732 -28.31534 -27.55493 -25.59394 -21.91280 -21.25337 -20.66181 -18.59661 -17.37177 -16.57909 -15.74531 -15.40011 -14.79485 -14.39979 -14.24433 -14.06614 -13.06312 -12.95352 -12.85988 -12.81218 -12.45660 -12.06753 -11.73434 -11.65601 -11.56136 -11.28693 -11.05265 -9.94823 -9.84620 -8.68139 -8.11391 -5.89828 1.36632 1.43904 1.57393 1.84040 2.39017 2.78896 3.01727 3.85753 4.14562 4.27195 4.32724 4.48015 4.76276 4.86910 4.94440 4.97889 5.14316 5.24116 5.24924 5.35297 5.46159 5.61073 5.65983 5.82311 5.98406 6.19326 6.56385 7.13966 7.34111 7.54156 8.25611 8.85387 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.030280 B = 0.015734 C = 0.010991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.488001 B = 1779.181947 C = 2546.866638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.139 4.139 4 C 0.002 3.998 5 C -0.180 4.180 6 N -0.566 5.566 7 H 0.413 0.587 8 C 0.129 3.871 9 N -0.520 5.520 10 C 0.153 3.847 11 C -0.466 4.466 12 H 0.080 0.920 13 C 0.019 3.981 14 N -0.824 5.824 15 Si 0.965 3.035 16 H -0.255 1.255 17 H -0.277 1.277 18 H -0.276 1.276 19 H 0.054 0.946 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.212 0.788 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 -4.051 -3.606 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C -0.196 4.196 4 C -0.036 4.036 5 C -0.291 4.291 6 N -0.175 5.175 7 H 0.251 0.749 8 C -0.153 4.153 9 N -0.245 5.245 10 C 0.028 3.972 11 C -0.502 4.502 12 H 0.098 0.902 13 C -0.193 4.193 14 N -0.453 5.453 15 Si 0.788 3.212 16 H -0.178 1.178 17 H -0.202 1.202 18 H -0.202 1.202 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.228 0.772 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.941 -3.545 -3.387 9.333 hybrid contribution -0.338 -0.054 0.030 0.343 sum -8.279 -3.600 -3.357 9.632 Atomic orbital electron populations 1.21797 0.93610 1.02105 1.01971 1.21065 0.95999 0.95870 0.97250 1.21879 1.01477 0.96225 1.00043 1.19559 0.86964 0.99435 0.97671 1.21411 0.94508 0.92351 1.20817 1.42569 1.06797 1.16143 1.52020 0.74926 1.25499 0.86234 0.96922 1.06665 1.71091 1.26786 1.07723 1.18851 1.18678 0.86497 0.94318 0.97677 1.18814 0.93557 0.98543 1.39248 0.90171 1.26616 0.94659 1.02751 0.95272 1.70275 0.99938 1.36089 1.38961 0.85421 0.79518 0.78323 0.77973 1.17797 1.20216 1.20177 0.92712 0.92073 0.91727 0.92857 0.93644 0.93805 0.93276 0.91572 0.92660 0.77189 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.19 71.98 0.66 -2.78 15 2 C -0.08 -2.75 2.91 -10.79 -0.03 -2.78 15 3 C -0.14 -5.33 7.80 71.98 0.56 -4.77 15 4 C 0.00 0.09 4.99 29.85 0.15 0.24 15 5 C -0.18 -8.24 6.19 42.10 0.26 -7.98 15 6 N -0.57 -22.44 6.12 -183.40 -1.12 -23.56 15 7 H 0.41 12.31 8.96 -92.71 -0.83 11.48 15 8 C 0.13 5.79 13.00 180.07 2.34 8.13 15 9 N -0.52 -29.79 9.51 -191.86 -1.82 -31.61 15 10 C 0.15 8.57 5.82 39.44 0.23 8.80 15 11 C -0.47 -26.53 7.28 23.36 0.17 -26.36 15 12 H 0.08 4.32 5.91 -2.91 -0.02 4.30 15 13 C 0.02 1.09 5.49 85.17 0.47 1.56 15 14 N -0.82 -49.82 11.94 21.79 0.26 -49.56 15 15 Si 0.96 42.94 29.56 68.60 2.03 44.97 15 16 H -0.25 -10.70 7.11 99.48 0.71 -9.99 15 17 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 18 H -0.28 -12.00 7.11 99.48 0.71 -11.30 15 19 H 0.05 1.36 8.14 -2.38 -0.02 1.34 15 20 H 0.06 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.04 1.75 7.22 -2.39 -0.02 1.73 15 24 H 0.04 2.07 5.38 -2.39 -0.01 2.06 15 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 15 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 27 H 0.05 2.18 7.84 -2.39 -0.02 2.16 15 28 H 0.21 7.38 8.06 -2.91 -0.02 7.36 15 29 H 0.26 14.76 8.30 -92.71 -0.77 13.99 15 Total: -1.00 -70.24 241.64 4.47 -65.77 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.31 Total: 19.94 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 4.81 Total: -25.94 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -2.69 Total: -104.74 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -70.24 4.47 -65.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345907.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.660 kcal (2) G-P(sol) polarization free energy of solvation -70.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds