Wall clock time and date at job start Mon Mar 30 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36343 * 125.64008 * 2 1 4 4 C 1.34847 * 108.22259 * 180.02562 * 3 2 1 5 5 C 1.40890 * 107.41841 * 359.97438 * 4 3 2 6 6 C 1.34859 * 107.41297 * 359.73942 * 5 4 3 7 7 C 1.50696 * 125.88742 * 180.24837 * 6 5 4 8 8 H 1.09003 * 109.47002 * 155.21075 * 7 6 5 9 9 N 1.46899 * 109.47332 * 35.20900 * 7 6 5 10 10 C 1.52999 * 109.47753 * 275.20816 * 7 6 5 11 11 C 1.50691 * 109.47552 * 185.00275 * 10 7 6 12 12 H 1.07996 * 120.00443 * 0.02562 * 11 10 7 13 13 C 1.37881 * 120.00223 * 180.02562 * 11 10 7 14 14 N 1.31512 * 119.99877 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00251 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47162 * 59.99951 * 15 13 11 17 17 H 1.48503 * 109.47044 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47236 * 299.99499 * 15 13 11 19 19 H 1.09002 * 109.46538 * 95.25119 * 1 2 3 20 20 H 1.09004 * 109.46775 * 335.25652 * 1 2 3 21 21 H 1.08997 * 109.47013 * 215.25217 * 1 2 3 22 22 H 1.08000 * 125.88710 * 359.97438 * 3 2 1 23 23 H 1.07995 * 126.29174 * 180.02562 * 4 3 2 24 24 H 1.07998 * 126.29835 * 179.97438 * 5 4 3 25 25 H 1.00902 * 110.99992 * 174.01465 * 9 7 6 26 26 H 1.00892 * 111.00076 * 297.97247 * 9 7 6 27 27 H 1.09008 * 109.46767 * 305.00674 * 10 7 6 28 28 H 1.08997 * 109.46784 * 64.99704 * 10 7 6 29 29 H 0.97006 * 120.00596 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1080 0.0000 4 6 3.5461 0.7044 -0.0006 5 6 3.5461 -0.7045 -0.0003 6 6 2.2593 -1.1081 0.0062 7 6 1.7819 -2.5374 0.0142 8 1 0.7834 -2.5845 0.4490 9 7 2.7030 -3.3570 0.8128 10 6 1.7390 -3.0689 -1.4199 11 6 1.1463 -4.4543 -1.4247 12 1 0.8311 -4.9101 -0.4977 13 6 1.0062 -5.1402 -2.6126 14 7 1.3895 -4.5850 -3.7415 15 14 0.2707 -6.8573 -2.6186 16 1 -1.1077 -6.8073 -2.0686 17 1 0.2293 -7.3731 -4.0106 18 1 1.1054 -7.7563 -1.7818 19 1 -0.3632 -0.0941 -1.0234 20 1 -0.3633 0.9334 0.4302 21 1 -0.3633 -0.8392 0.5931 22 1 1.9172 2.1324 -0.0004 23 1 4.4165 1.3436 -0.0003 24 1 4.4165 -1.3438 -0.0011 25 1 2.3537 -4.2981 0.9149 26 1 3.6285 -3.3563 0.4111 27 1 1.1257 -2.4091 -2.0337 28 1 2.7506 -3.1050 -1.8243 29 1 1.2906 -5.0673 -4.5774 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260392182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:19 Heat of formation + Delta-G solvation = 37.966658 kcal Electronic energy + Delta-G solvation = -12045.891963 eV Core-core repulsion = 9969.385971 eV Total energy + Delta-G solvation = -2076.505992 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.64485 -35.33170 -32.47706 -32.27382 -28.30012 -27.74512 -25.89189 -24.08976 -21.14919 -19.93072 -18.26942 -16.98521 -16.00701 -14.86088 -14.63273 -14.49439 -13.44347 -13.21849 -12.71747 -12.50898 -12.16189 -11.87619 -11.74444 -11.51824 -11.34467 -10.91116 -10.68317 -10.25572 -9.93604 -9.20026 -8.47814 -8.04376 -7.86654 -7.26137 -6.08729 -4.14281 2.85158 3.26902 3.32258 3.33777 3.47749 3.65541 4.37549 5.12121 5.24918 5.34296 5.48975 5.63853 5.74619 5.84910 6.04444 6.14456 6.35368 6.71185 6.85687 6.93095 7.44996 7.55211 7.67637 7.79151 7.86398 7.93793 8.10241 8.22473 8.35998 8.92619 9.50890 11.01637 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.054212 B = 0.009203 C = 0.008946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.369108 B = 3041.865868 C = 3129.303807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.449 5.449 3 C -0.038 4.038 4 C -0.202 4.202 5 C -0.202 4.202 6 C 0.056 3.944 7 C 0.156 3.844 8 H 0.067 0.933 9 N -0.835 5.835 10 C 0.004 3.996 11 C -0.529 4.529 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 H 0.072 0.928 20 H 0.076 0.924 21 H 0.081 0.919 22 H 0.153 0.847 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.346 0.654 26 H 0.334 0.666 27 H 0.015 0.985 28 H 0.021 0.979 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 7.285 6.290 9.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.125 5.125 3 C -0.167 4.167 4 C -0.227 4.227 5 C -0.226 4.226 6 C -0.056 4.056 7 C 0.044 3.956 8 H 0.085 0.915 9 N -0.364 5.364 10 C -0.035 4.035 11 C -0.567 4.567 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 H 0.090 0.910 20 H 0.095 0.905 21 H 0.100 0.900 22 H 0.170 0.830 23 H 0.145 0.855 24 H 0.146 0.854 25 H 0.160 0.840 26 H 0.146 0.854 27 H 0.034 0.966 28 H 0.039 0.961 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.114 7.781 6.689 10.321 hybrid contribution -0.368 -1.411 -1.138 1.850 sum -1.482 6.370 5.551 8.578 Atomic orbital electron populations 1.21936 0.78087 1.03378 1.03363 1.43814 1.05779 1.05822 1.57101 1.21563 0.90702 0.90881 1.13550 1.20761 0.95497 0.95258 1.11231 1.20467 0.95441 0.94405 1.12260 1.20615 0.90248 0.88881 1.05887 1.19934 0.94667 0.85266 0.95733 0.91458 1.59039 1.05631 1.17316 1.54371 1.19756 0.97831 0.95708 0.90166 1.21126 1.41860 1.00514 0.93186 0.92593 1.25019 0.95400 0.98110 0.95617 1.69968 1.46960 1.37825 0.98091 0.86638 0.79734 0.84445 0.77066 1.20239 1.21273 1.20106 0.90969 0.90539 0.90044 0.82987 0.85508 0.85390 0.84029 0.85437 0.96628 0.96086 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.85 59.85 0.65 1.69 15 2 N -0.45 -7.96 3.15 -119.90 -0.38 -8.33 15 3 C -0.04 -0.63 11.42 -16.75 -0.19 -0.82 15 4 C -0.20 -3.50 10.86 -39.78 -0.43 -3.94 15 5 C -0.20 -3.94 10.18 -39.78 -0.40 -4.34 15 6 C 0.06 1.13 5.94 -81.79 -0.49 0.65 15 7 C 0.16 3.33 3.00 -68.87 -0.21 3.12 15 8 H 0.07 1.43 7.02 -51.93 -0.36 1.07 15 9 N -0.83 -16.33 9.01 -5.66 -0.05 -16.39 15 10 C 0.00 0.11 4.59 -27.89 -0.13 -0.02 15 11 C -0.53 -14.34 8.58 -34.44 -0.30 -14.63 15 12 H 0.06 1.45 7.15 -52.49 -0.38 1.07 15 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 14 N -0.89 -26.45 13.29 55.43 0.74 -25.71 15 15 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 15 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 19 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.08 0.81 8.12 -51.93 -0.42 0.39 15 21 H 0.08 1.13 7.13 -51.93 -0.37 0.76 15 22 H 0.15 1.92 8.06 -52.49 -0.42 1.50 15 23 H 0.13 1.86 8.06 -52.49 -0.42 1.44 15 24 H 0.13 2.39 7.52 -52.49 -0.39 2.00 15 25 H 0.35 6.71 7.97 -39.29 -0.31 6.40 15 26 H 0.33 6.38 8.11 -39.30 -0.32 6.06 15 27 H 0.02 0.43 8.14 -51.92 -0.42 0.01 15 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 15 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 249.06 15.07 3.75 3.75 Total: -1.00 -30.80 249.06 -6.36 -37.16 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -3.81 Total: 10.09 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.59 Total: -16.68 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.31 Total: -50.43 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.80 -6.36 -37.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.122 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds