Wall clock time and date at job start Mon Mar 30 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36343 * 125.64008 * 2 1 4 4 C 1.34847 * 108.22259 * 180.02562 * 3 2 1 5 5 C 1.40890 * 107.41841 * 359.97438 * 4 3 2 6 6 C 1.34859 * 107.41297 * 359.73942 * 5 4 3 7 7 C 1.50696 * 125.88742 * 180.24837 * 6 5 4 8 8 H 1.09003 * 109.47002 * 155.21075 * 7 6 5 9 9 N 1.46899 * 109.47332 * 35.20900 * 7 6 5 10 10 C 1.52999 * 109.47753 * 275.20816 * 7 6 5 11 11 C 1.50691 * 109.47552 * 185.00275 * 10 7 6 12 12 H 1.07996 * 120.00443 * 0.02562 * 11 10 7 13 13 C 1.37881 * 120.00223 * 180.02562 * 11 10 7 14 14 N 1.31512 * 119.99877 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00251 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47162 * 59.99951 * 15 13 11 17 17 H 1.48503 * 109.47044 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47236 * 299.99499 * 15 13 11 19 19 H 1.09002 * 109.46538 * 95.25119 * 1 2 3 20 20 H 1.09004 * 109.46775 * 335.25652 * 1 2 3 21 21 H 1.08997 * 109.47013 * 215.25217 * 1 2 3 22 22 H 1.08000 * 125.88710 * 359.97438 * 3 2 1 23 23 H 1.07995 * 126.29174 * 180.02562 * 4 3 2 24 24 H 1.07998 * 126.29835 * 179.97438 * 5 4 3 25 25 H 1.00902 * 110.99992 * 174.01465 * 9 7 6 26 26 H 1.00892 * 111.00076 * 297.97247 * 9 7 6 27 27 H 1.09008 * 109.46767 * 305.00674 * 10 7 6 28 28 H 1.08997 * 109.46784 * 64.99704 * 10 7 6 29 29 H 0.97006 * 120.00596 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1080 0.0000 4 6 3.5461 0.7044 -0.0006 5 6 3.5461 -0.7045 -0.0003 6 6 2.2593 -1.1081 0.0062 7 6 1.7819 -2.5374 0.0142 8 1 0.7834 -2.5845 0.4490 9 7 2.7030 -3.3570 0.8128 10 6 1.7390 -3.0689 -1.4199 11 6 1.1463 -4.4543 -1.4247 12 1 0.8311 -4.9101 -0.4977 13 6 1.0062 -5.1402 -2.6126 14 7 1.3895 -4.5850 -3.7415 15 14 0.2707 -6.8573 -2.6186 16 1 -1.1077 -6.8073 -2.0686 17 1 0.2293 -7.3731 -4.0106 18 1 1.1054 -7.7563 -1.7818 19 1 -0.3632 -0.0941 -1.0234 20 1 -0.3633 0.9334 0.4302 21 1 -0.3633 -0.8392 0.5931 22 1 1.9172 2.1324 -0.0004 23 1 4.4165 1.3436 -0.0003 24 1 4.4165 -1.3438 -0.0011 25 1 2.3537 -4.2981 0.9149 26 1 3.6285 -3.3563 0.4111 27 1 1.1257 -2.4091 -2.0337 28 1 2.7506 -3.1050 -1.8243 29 1 1.2906 -5.0673 -4.5774 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260392182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:19 Heat of formation + Delta-G solvation = 17.260191 kcal Electronic energy + Delta-G solvation = -12046.789863 eV Core-core repulsion = 9969.385971 eV Total energy + Delta-G solvation = -2077.403892 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.01841 -37.12218 -34.48256 -33.60843 -30.00307 -29.50198 -27.11409 -25.98757 -22.97708 -21.27543 -19.74900 -18.80836 -17.69695 -16.66925 -16.20951 -15.97777 -15.07977 -14.61038 -14.42106 -14.09739 -13.98898 -13.36568 -13.07001 -13.06402 -12.78915 -12.72140 -12.49594 -12.11087 -11.91578 -11.24591 -10.63241 -9.53386 -9.39360 -8.74857 -8.22683 -6.37068 1.39472 1.42111 1.46493 1.50560 2.20791 2.22806 2.38727 3.09489 3.86834 4.06549 4.18452 4.34358 4.42511 4.47835 4.69440 4.80631 4.83326 4.90476 5.29843 5.40150 5.50849 5.57871 5.72536 6.11011 6.22111 6.30354 6.46991 6.63885 6.72334 6.80157 7.33539 8.87747 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.054212 B = 0.009203 C = 0.008946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.369108 B = 3041.865868 C = 3129.303807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.455 5.455 3 C -0.023 4.023 4 C -0.222 4.222 5 C -0.217 4.217 6 C 0.018 3.982 7 C 0.172 3.828 8 H 0.068 0.932 9 N -0.824 5.824 10 C 0.018 3.982 11 C -0.540 4.540 12 H 0.068 0.932 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.266 1.266 17 H -0.288 1.288 18 H -0.264 1.264 19 H 0.065 0.935 20 H 0.117 0.883 21 H 0.078 0.922 22 H 0.196 0.804 23 H 0.151 0.849 24 H 0.124 0.876 25 H 0.347 0.653 26 H 0.336 0.664 27 H -0.018 1.018 28 H -0.012 1.012 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 7.716 7.364 10.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.131 5.131 3 C -0.152 4.152 4 C -0.246 4.246 5 C -0.242 4.242 6 C -0.094 4.094 7 C 0.059 3.941 8 H 0.086 0.914 9 N -0.352 5.352 10 C -0.021 4.021 11 C -0.577 4.577 12 H 0.086 0.914 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.213 1.213 18 H -0.189 1.189 19 H 0.084 0.916 20 H 0.136 0.864 21 H 0.097 0.903 22 H 0.213 0.787 23 H 0.169 0.831 24 H 0.142 0.858 25 H 0.161 0.839 26 H 0.148 0.852 27 H 0.000 1.000 28 H 0.006 0.994 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.880 8.212 7.788 11.472 hybrid contribution -0.108 -1.460 -1.476 2.079 sum -1.988 6.752 6.312 9.454 Atomic orbital electron populations 1.22177 0.76205 1.05572 1.03364 1.44105 1.07145 1.05462 1.56381 1.22292 0.90244 0.92179 1.10519 1.21116 0.97189 0.94400 1.11918 1.20717 0.95271 0.95990 1.12193 1.20464 0.91183 0.88977 1.08793 1.19593 0.95186 0.86578 0.92739 0.91440 1.59050 1.05451 1.17232 1.53493 1.19591 0.94905 0.95081 0.92536 1.21525 1.41386 1.01115 0.93715 0.91383 1.25988 0.95779 1.02629 0.95158 1.70122 1.48485 1.39794 0.98843 0.85465 0.79262 0.78999 0.77097 1.19111 1.21321 1.18854 0.91611 0.86423 0.90300 0.78729 0.83128 0.85784 0.83920 0.85197 0.99966 0.99375 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.78 10.85 127.77 1.39 3.17 15 2 N -0.45 -15.45 3.15 -533.25 -1.68 -17.13 15 3 C -0.02 -0.69 11.42 83.21 0.95 0.26 15 4 C -0.22 -7.29 10.86 22.14 0.24 -7.05 15 5 C -0.22 -8.46 10.18 22.14 0.23 -8.23 15 6 C 0.02 0.74 5.94 41.08 0.24 0.99 15 7 C 0.17 7.40 3.00 44.17 0.13 7.53 15 8 H 0.07 2.87 7.02 -2.39 -0.02 2.85 15 9 N -0.82 -32.26 9.01 -171.81 -1.55 -33.81 15 10 C 0.02 0.95 4.59 29.84 0.14 1.09 15 11 C -0.54 -29.53 8.58 25.60 0.22 -29.31 15 12 H 0.07 3.49 7.15 -2.91 -0.02 3.46 15 13 C 0.00 0.16 5.46 84.66 0.46 0.62 15 14 N -0.93 -56.64 13.29 21.45 0.28 -56.35 15 15 Si 0.97 43.24 29.54 68.60 2.03 45.27 15 16 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 17 H -0.29 -12.78 7.11 99.48 0.71 -12.08 15 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 15 19 H 0.07 1.80 8.14 -2.39 -0.02 1.79 15 20 H 0.12 2.08 8.12 -2.39 -0.02 2.06 15 21 H 0.08 2.09 7.13 -2.39 -0.02 2.08 15 22 H 0.20 3.99 8.06 -2.91 -0.02 3.96 15 23 H 0.15 4.07 8.06 -2.91 -0.02 4.05 15 24 H 0.12 4.73 7.52 -2.91 -0.02 4.71 15 25 H 0.35 13.32 7.97 -89.69 -0.71 12.61 15 26 H 0.34 13.02 8.11 -89.70 -0.73 12.29 15 27 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 15 28 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 15 29 H 0.26 15.09 8.31 -92.70 -0.77 14.32 15 Total: -1.00 -66.67 249.06 2.79 -63.88 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: -0.29 Total: 29.09 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 4.00 Total: -30.94 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -2.94 Total: -107.29 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -66.67 2.79 -63.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260392182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.135 kcal (2) G-P(sol) polarization free energy of solvation -66.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds