Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48498 * 109.47334 * 270.00525 * 3 2 1 5 5 H 1.48507 * 109.47110 * 30.00323 * 3 2 1 6 6 H 1.48501 * 109.47081 * 149.99752 * 3 2 1 7 7 C 1.37870 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99940 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00022 * 0.02562 * 7 2 1 10 10 H 1.09000 * 115.55030 * 325.66530 * 9 7 2 11 11 C 1.53006 * 117.50024 * 111.37691 * 9 7 2 12 12 C 1.53007 * 60.00109 * 107.49056 * 11 9 7 13 13 H 1.08995 * 117.51761 * 107.48352 * 12 11 9 14 14 C 1.52997 * 117.49546 * 252.51343 * 12 11 9 15 15 C 1.53006 * 109.46646 * 243.61965 * 14 12 11 16 16 C 1.54266 * 110.03373 * 292.16642 * 15 14 12 17 17 C 1.54883 * 104.19342 * 217.10711 * 16 15 14 18 18 C 1.54884 * 102.74976 * 37.94325 * 17 16 15 19 19 C 1.53873 * 110.02977 * 175.00113 * 15 14 12 20 20 H 0.96996 * 120.00081 * 359.97438 * 1 2 3 21 21 H 1.08998 * 117.49758 * 359.97438 * 11 9 7 22 22 H 1.09004 * 117.49263 * 214.97888 * 11 9 7 23 23 H 1.08995 * 109.47505 * 123.62424 * 14 12 11 24 24 H 1.09000 * 109.47175 * 3.61940 * 14 12 11 25 25 H 1.09000 * 110.01709 * 53.61060 * 15 14 12 26 26 H 1.08998 * 110.48638 * 335.78849 * 16 15 14 27 27 H 1.09000 * 110.48060 * 98.42546 * 16 15 14 28 28 H 1.09004 * 110.75629 * 279.62669 * 17 16 15 29 29 H 1.09001 * 110.91126 * 156.33259 * 17 16 15 30 30 H 1.09000 * 110.48596 * 203.37518 * 18 17 16 31 31 H 1.09002 * 110.48692 * 80.73692 * 18 17 16 32 32 H 1.09006 * 110.03296 * 238.57431 * 19 15 14 33 33 H 1.09003 * 110.03167 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4990 -0.0017 10 1 0.3127 -2.5006 0.5526 11 6 1.3269 -3.3574 -1.2661 12 6 2.0734 -3.7894 -0.0023 13 1 1.6758 -4.6398 0.5516 14 6 3.5976 -3.6559 -0.0017 15 6 4.2309 -5.0431 0.1233 16 6 3.9413 -5.6324 1.5193 17 6 5.2406 -6.3903 1.8886 18 6 6.3478 -5.4654 1.3250 19 6 5.7610 -4.9369 -0.0001 20 1 -0.4850 0.8400 0.0004 21 1 1.9213 -2.9778 -2.0971 22 1 0.4379 -3.9237 -1.5438 23 1 3.9078 -3.0376 0.8406 24 1 3.9219 -3.1909 -0.9326 25 1 3.8389 -5.7033 -0.6502 26 1 3.7474 -4.8354 2.2371 27 1 3.0974 -6.3209 1.4750 28 1 5.2692 -7.3665 1.4044 29 1 5.3368 -6.4938 2.9694 30 1 7.2602 -6.0320 1.1392 31 1 6.5425 -4.6414 2.0115 32 1 6.1116 -5.5463 -0.8331 33 1 6.0523 -3.8972 -0.1495 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260456022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = -13.387189 kcal Electronic energy + Delta-G solvation = -12151.324043 eV Core-core repulsion = 10176.131524 eV Total energy + Delta-G solvation = -1975.192518 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.30271 -36.01501 -32.20281 -30.20536 -28.44054 -25.52197 -24.63800 -20.75256 -20.28338 -19.29633 -18.93149 -16.26270 -15.33684 -14.80731 -14.48265 -14.05888 -13.12679 -12.85748 -12.70464 -11.94226 -11.65078 -11.07758 -10.96671 -10.87140 -10.80128 -10.72769 -10.46045 -10.33615 -10.18709 -9.95976 -9.89422 -9.24319 -8.91534 -8.32152 -8.09509 -6.03607 -4.01331 3.30312 3.36972 3.40304 4.42348 4.85975 4.92405 4.99954 5.10528 5.56259 5.62307 5.68804 5.78404 5.85504 5.94102 5.99382 6.07604 6.18499 6.23691 6.32146 6.45415 6.49654 6.56990 6.67726 6.79252 6.89528 6.99931 7.05194 7.12729 7.49870 7.69875 7.94524 8.51122 9.00342 9.58079 11.07587 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.045774 B = 0.008579 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.558263 B = 3263.016406 C = 3595.021813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.489 4.489 8 H 0.062 0.938 9 C 0.032 3.968 10 H 0.072 0.928 11 C -0.212 4.212 12 C -0.188 4.188 13 H 0.076 0.924 14 C -0.062 4.062 15 C -0.090 4.090 16 C -0.117 4.117 17 C -0.126 4.126 18 C -0.124 4.124 19 C -0.122 4.122 20 H 0.261 0.739 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.949 -9.172 1.783 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.080 0.920 9 C 0.014 3.986 10 H 0.090 0.910 11 C -0.250 4.250 12 C -0.206 4.206 13 H 0.094 0.906 14 C -0.099 4.099 15 C -0.109 4.109 16 C -0.154 4.154 17 C -0.164 4.164 18 C -0.161 4.161 19 C -0.160 4.160 20 H 0.071 0.929 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.787 -9.032 1.785 12.727 hybrid contribution 0.316 0.828 -0.182 0.904 sum 9.103 -8.204 1.603 12.359 Atomic orbital electron populations 1.69973 1.06106 1.26686 1.49907 1.25048 0.94837 0.99261 0.94699 0.86585 0.79908 0.83304 0.78174 1.20604 1.21142 1.19735 1.20705 0.92762 0.89357 1.49840 0.92011 1.19937 0.96165 0.88402 0.94107 0.90967 1.23064 1.00918 1.07935 0.93075 1.22264 0.93451 1.01654 1.03245 0.90623 1.21049 0.93663 0.93843 1.01334 1.21818 0.94097 0.98214 0.96773 1.22429 0.96528 0.99261 0.97223 1.22506 0.95667 0.98308 0.99890 1.22344 0.97584 0.98882 0.97336 1.22238 0.95826 1.01045 0.96895 0.92919 0.90825 0.92231 0.92058 0.92699 0.91771 0.91207 0.92237 0.92110 0.92173 0.92457 0.91805 0.92583 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.13 55.43 0.73 -25.72 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.49 -13.71 8.71 -34.45 -0.30 -14.01 16 8 H 0.06 1.68 6.57 -52.48 -0.34 1.34 16 9 C 0.03 0.85 5.58 -91.77 -0.51 0.34 16 10 H 0.07 2.05 7.90 -51.93 -0.41 1.63 16 11 C -0.21 -4.96 9.88 -26.72 -0.26 -5.23 16 12 C -0.19 -4.07 5.55 -90.61 -0.50 -4.57 16 13 H 0.08 1.54 7.50 -51.93 -0.39 1.15 16 14 C -0.06 -1.19 3.27 -26.73 -0.09 -1.28 16 15 C -0.09 -1.42 2.92 -89.50 -0.26 -1.68 16 16 C -0.12 -1.68 5.54 -25.08 -0.14 -1.82 16 17 C -0.13 -1.53 6.91 -24.74 -0.17 -1.70 16 18 C -0.12 -1.51 6.83 -25.08 -0.17 -1.68 16 19 C -0.12 -1.68 6.46 -25.62 -0.17 -1.84 16 20 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 21 H 0.07 1.74 8.03 -51.93 -0.42 1.32 16 22 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 23 H 0.06 1.25 7.59 -51.93 -0.39 0.86 16 24 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.08 7.76 -51.93 -0.40 0.68 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.92 7.67 -51.93 -0.40 0.52 16 LS Contribution 265.42 15.07 4.00 4.00 Total: -1.00 -28.64 265.42 -8.65 -37.29 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.68 Total: -0.28 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: -2.67 Total: -31.75 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.73 Total: -25.72 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.64 -8.65 -37.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.905 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds