Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48498 * 109.47334 * 270.00525 * 3 2 1 5 5 H 1.48507 * 109.47110 * 30.00323 * 3 2 1 6 6 H 1.48501 * 109.47081 * 149.99752 * 3 2 1 7 7 C 1.37870 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99940 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00022 * 0.02562 * 7 2 1 10 10 H 1.09000 * 115.55030 * 325.66530 * 9 7 2 11 11 C 1.53006 * 117.50024 * 111.37691 * 9 7 2 12 12 C 1.53007 * 60.00109 * 107.49056 * 11 9 7 13 13 H 1.08995 * 117.51761 * 107.48352 * 12 11 9 14 14 C 1.52997 * 117.49546 * 252.51343 * 12 11 9 15 15 C 1.53006 * 109.46646 * 243.61965 * 14 12 11 16 16 C 1.54266 * 110.03373 * 292.16642 * 15 14 12 17 17 C 1.54883 * 104.19342 * 217.10711 * 16 15 14 18 18 C 1.54884 * 102.74976 * 37.94325 * 17 16 15 19 19 C 1.53873 * 110.02977 * 175.00113 * 15 14 12 20 20 H 0.96996 * 120.00081 * 359.97438 * 1 2 3 21 21 H 1.08998 * 117.49758 * 359.97438 * 11 9 7 22 22 H 1.09004 * 117.49263 * 214.97888 * 11 9 7 23 23 H 1.08995 * 109.47505 * 123.62424 * 14 12 11 24 24 H 1.09000 * 109.47175 * 3.61940 * 14 12 11 25 25 H 1.09000 * 110.01709 * 53.61060 * 15 14 12 26 26 H 1.08998 * 110.48638 * 335.78849 * 16 15 14 27 27 H 1.09000 * 110.48060 * 98.42546 * 16 15 14 28 28 H 1.09004 * 110.75629 * 279.62669 * 17 16 15 29 29 H 1.09001 * 110.91126 * 156.33259 * 17 16 15 30 30 H 1.09000 * 110.48596 * 203.37518 * 18 17 16 31 31 H 1.09002 * 110.48692 * 80.73692 * 18 17 16 32 32 H 1.09006 * 110.03296 * 238.57431 * 19 15 14 33 33 H 1.09003 * 110.03167 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4990 -0.0017 10 1 0.3127 -2.5006 0.5526 11 6 1.3269 -3.3574 -1.2661 12 6 2.0734 -3.7894 -0.0023 13 1 1.6758 -4.6398 0.5516 14 6 3.5976 -3.6559 -0.0017 15 6 4.2309 -5.0431 0.1233 16 6 3.9413 -5.6324 1.5193 17 6 5.2406 -6.3903 1.8886 18 6 6.3478 -5.4654 1.3250 19 6 5.7610 -4.9369 -0.0001 20 1 -0.4850 0.8400 0.0004 21 1 1.9213 -2.9778 -2.0971 22 1 0.4379 -3.9237 -1.5438 23 1 3.9078 -3.0376 0.8406 24 1 3.9219 -3.1909 -0.9326 25 1 3.8389 -5.7033 -0.6502 26 1 3.7474 -4.8354 2.2371 27 1 3.0974 -6.3209 1.4750 28 1 5.2692 -7.3665 1.4044 29 1 5.3368 -6.4938 2.9694 30 1 7.2602 -6.0320 1.1392 31 1 6.5425 -4.6414 2.0115 32 1 6.1116 -5.5463 -0.8331 33 1 6.0523 -3.8972 -0.1495 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260456022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = -27.358394 kcal Electronic energy + Delta-G solvation = -12151.929880 eV Core-core repulsion = 10176.131524 eV Total energy + Delta-G solvation = -1975.798355 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.62890 -37.71727 -34.30089 -31.58970 -29.50456 -27.65791 -26.04501 -22.48113 -21.67183 -20.81713 -20.36593 -18.26014 -16.71401 -16.43148 -16.07782 -15.56585 -14.75713 -14.23620 -14.08580 -13.54616 -13.46119 -12.91407 -12.73319 -12.47076 -12.18356 -11.89832 -11.83618 -11.68063 -11.57698 -11.40877 -11.21808 -11.12971 -10.94352 -10.29930 -10.06363 -8.18886 -6.22785 1.39971 1.40471 1.51878 2.40193 3.00480 3.58893 3.75995 3.85344 3.93577 4.28987 4.50633 4.59352 4.64489 4.69032 4.75504 4.82055 4.86673 4.93045 5.00893 5.08610 5.12156 5.17205 5.22334 5.28824 5.39865 5.51206 5.53304 5.56167 5.67441 5.73649 5.79069 6.37796 6.84506 7.39497 8.93515 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.045774 B = 0.008579 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.558263 B = 3263.016406 C = 3595.021813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.502 4.502 8 H 0.063 0.937 9 C -0.011 4.011 10 H 0.041 0.959 11 C -0.205 4.205 12 C -0.155 4.155 13 H 0.092 0.908 14 C -0.056 4.056 15 C -0.087 4.087 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.122 4.122 19 C -0.123 4.123 20 H 0.263 0.737 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.792 -10.163 1.822 14.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.539 4.539 8 H 0.082 0.918 9 C -0.030 4.030 10 H 0.059 0.941 11 C -0.243 4.243 12 C -0.174 4.174 13 H 0.110 0.890 14 C -0.094 4.094 15 C -0.105 4.105 16 C -0.158 4.158 17 C -0.157 4.157 18 C -0.160 4.160 19 C -0.160 4.160 20 H 0.072 0.928 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.643 -10.036 1.824 14.742 hybrid contribution -0.297 1.080 -0.196 1.137 sum 10.346 -8.956 1.627 13.781 Atomic orbital electron populations 1.70104 1.07734 1.27611 1.51404 1.25926 0.95707 1.03025 0.94497 0.85499 0.78759 0.78674 0.78436 1.19923 1.20679 1.18732 1.21010 0.92981 0.90457 1.49472 0.91841 1.19852 0.96317 0.90198 0.96631 0.94123 1.23033 1.01698 1.06930 0.92656 1.22346 0.94634 0.99184 1.01195 0.88953 1.20998 0.92054 0.96239 1.00066 1.21771 0.95425 0.95561 0.97793 1.22432 0.98272 0.99152 0.95947 1.22487 0.93835 0.98489 1.00871 1.22354 0.98426 0.99007 0.96177 1.22232 0.94221 1.00976 0.98580 0.92850 0.91190 0.90975 0.93486 0.93871 0.91393 0.92849 0.91809 0.90680 0.90981 0.90321 0.92249 0.91027 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.13 21.45 0.28 -56.38 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.50 -28.62 8.71 25.60 0.22 -28.39 16 8 H 0.06 3.50 6.57 -2.91 -0.02 3.48 16 9 C -0.01 -0.62 5.58 -11.54 -0.06 -0.68 16 10 H 0.04 2.41 7.90 -2.39 -0.02 2.39 16 11 C -0.21 -9.61 9.88 30.60 0.30 -9.31 16 12 C -0.16 -6.67 5.55 -10.79 -0.06 -6.73 16 13 H 0.09 3.65 7.50 -2.39 -0.02 3.63 16 14 C -0.06 -2.14 3.27 30.60 0.10 -2.04 16 15 C -0.09 -2.56 2.92 -10.07 -0.03 -2.58 16 16 C -0.12 -3.22 5.54 31.67 0.18 -3.05 16 17 C -0.12 -2.50 6.91 31.88 0.22 -2.28 16 18 C -0.12 -2.60 6.83 31.66 0.22 -2.38 16 19 C -0.12 -3.06 6.46 31.31 0.20 -2.86 16 20 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 21 H 0.07 3.30 8.03 -2.39 -0.02 3.28 16 22 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 23 H 0.05 1.92 7.59 -2.39 -0.02 1.90 16 24 H 0.04 1.72 7.87 -2.39 -0.02 1.71 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.05 1.59 7.76 -2.39 -0.02 1.58 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.05 1.47 7.67 -2.39 -0.02 1.45 16 Total: -1.00 -61.68 265.42 5.10 -56.57 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.05 Total: 12.77 kcal Atomic # 6 Polarization: -61.20 SS G_CDS: 1.75 Total: -59.45 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.28 Total: -56.38 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -61.68 5.10 -56.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.216 kcal (2) G-P(sol) polarization free energy of solvation -61.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds