Wall clock time and date at job start Mon Mar 30 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47055 * 2 1 4 4 C 1.52996 * 109.47042 * 120.00137 * 2 1 3 5 5 H 1.09000 * 109.47224 * 304.86018 * 4 2 1 6 6 C 1.50696 * 109.47480 * 184.85995 * 4 2 1 7 7 H 1.08005 * 119.99679 * 325.09880 * 6 4 2 8 8 C 1.37879 * 120.00360 * 145.09362 * 6 4 2 9 9 N 1.31509 * 119.99664 * 185.00339 * 8 6 4 10 10 Si 1.86797 * 119.99858 * 5.00599 * 8 6 4 11 11 H 1.48504 * 109.47192 * 84.70801 * 10 8 6 12 12 H 1.48497 * 109.47015 * 204.70660 * 10 8 6 13 13 H 1.48501 * 109.47291 * 324.70648 * 10 8 6 14 14 C 1.50700 * 109.47222 * 64.85844 * 4 2 1 15 15 C 1.39871 * 125.90132 * 84.71463 * 14 4 2 16 16 C 1.35317 * 107.92274 * 179.86395 * 15 14 4 17 17 N 1.34952 * 107.74407 * 0.39401 * 16 15 14 18 18 H 0.96993 * 126.03502 * 179.75081 * 17 16 15 19 19 N 1.30843 * 125.89887 * 265.02193 * 14 4 2 20 20 H 1.09000 * 109.47553 * 300.00184 * 1 2 3 21 21 H 1.09005 * 109.47316 * 60.00324 * 1 2 3 22 22 H 1.09002 * 109.47450 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46655 * 239.99660 * 2 1 3 24 24 H 1.09004 * 109.47189 * 305.07009 * 3 2 1 25 25 H 1.09004 * 109.47607 * 65.07368 * 3 2 1 26 26 H 1.09004 * 109.47033 * 185.07113 * 3 2 1 27 27 H 0.97007 * 119.99600 * 180.02562 * 9 8 6 28 28 H 1.08003 * 126.03208 * 359.97438 * 15 14 4 29 29 H 1.07990 * 126.12602 * 180.14917 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6073 -0.2602 2.1371 6 6 3.5421 -0.6179 1.3110 7 1 4.1223 -0.6330 0.4001 8 6 4.1758 -0.5041 2.5302 9 7 5.4763 -0.3151 2.5801 10 14 3.1872 -0.6184 4.1109 11 1 3.0167 -2.0451 4.4862 12 1 3.9051 0.0966 5.1965 13 1 1.8537 0.0025 3.9068 14 6 1.6383 -2.1726 1.1905 15 6 2.3358 -3.1907 0.5322 16 6 1.6567 -4.3466 0.7155 17 7 0.5633 -4.0682 1.4559 18 1 -0.1108 -4.7052 1.7399 19 7 0.5738 -2.6969 1.7417 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6044 1.9818 -0.8411 25 1 1.7528 1.9294 0.9319 26 1 3.1262 1.4438 -0.0908 27 1 5.9222 -0.2354 3.4379 28 1 3.2552 -3.0749 -0.0226 29 1 1.9371 -5.3172 0.3340 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260503022.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:47 Heat of formation + Delta-G solvation = 34.831187 kcal Electronic energy + Delta-G solvation = -12416.499595 eV Core-core repulsion = 10339.857639 eV Total energy + Delta-G solvation = -2076.641956 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.84175 -37.68451 -34.34958 -32.44631 -30.65691 -29.53373 -27.72797 -24.91659 -22.14414 -21.52143 -19.87272 -19.00546 -18.59863 -16.41902 -15.76181 -15.46612 -14.85736 -14.46749 -14.32094 -14.09404 -13.85716 -13.31120 -12.98769 -12.85345 -12.30535 -11.99720 -11.83639 -11.62128 -11.44970 -11.32282 -10.86551 -10.69322 -9.94703 -9.37313 -8.25441 -6.24524 1.19604 1.29336 1.32870 1.41624 2.15293 2.29745 2.34865 3.13066 4.06104 4.24628 4.36206 4.40830 4.51629 4.82249 4.94959 5.04156 5.06004 5.14181 5.24701 5.32713 5.39267 5.48328 5.59618 5.72385 5.81396 5.98945 6.35805 6.73775 6.82164 7.06340 7.39327 8.90472 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.018719 C = 0.013975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.768008 B = 1495.437758 C = 2003.151036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 C -0.124 4.124 4 C 0.076 3.924 5 H 0.037 0.963 6 C -0.475 4.475 7 H 0.049 0.951 8 C 0.029 3.971 9 N -0.940 5.940 10 Si 0.917 3.083 11 H -0.286 1.286 12 H -0.284 1.284 13 H -0.251 1.251 14 C 0.095 3.905 15 C -0.284 4.284 16 C 0.064 3.936 17 N -0.483 5.483 18 H 0.447 0.553 19 N -0.353 5.353 20 H 0.045 0.955 21 H 0.068 0.932 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.043 0.957 27 H 0.264 0.736 28 H 0.132 0.868 29 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 -5.412 -3.915 11.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 C -0.182 4.182 4 C 0.056 3.944 5 H 0.056 0.944 6 C -0.513 4.513 7 H 0.068 0.932 8 C -0.169 4.169 9 N -0.581 5.581 10 Si 0.744 3.256 11 H -0.213 1.213 12 H -0.210 1.210 13 H -0.175 1.175 14 C -0.071 4.071 15 C -0.314 4.314 16 C -0.083 4.083 17 N -0.193 5.193 18 H 0.293 0.707 19 N -0.177 5.177 20 H 0.065 0.935 21 H 0.087 0.913 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.150 0.850 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -10.709 -5.173 -3.097 12.289 hybrid contribution 0.627 -0.677 0.667 1.139 sum -10.082 -5.850 -2.430 11.907 Atomic orbital electron populations 1.21777 0.95062 1.00925 1.01423 1.20928 0.94977 0.96362 0.96940 1.21603 1.00848 0.95064 1.00645 1.17969 0.94568 0.85474 0.96436 0.94448 1.20897 0.90169 1.47239 0.93036 0.93234 1.25567 0.95270 0.94717 1.01306 1.69996 1.09950 1.51921 1.26209 0.86191 0.80237 0.78153 0.80997 1.21273 1.21026 1.17537 1.23321 0.90805 0.99031 0.93977 1.21572 1.04975 0.92752 1.12069 1.23035 0.88538 1.00849 0.95925 1.46276 1.21954 1.07422 1.43601 0.70707 1.77161 1.23369 0.89996 1.27190 0.93545 0.91321 0.93959 0.92605 0.91604 0.94018 0.93757 0.92711 0.85032 0.76548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.01 71.98 0.65 -4.00 15 2 C -0.07 -2.93 2.49 -10.80 -0.03 -2.96 15 3 C -0.12 -4.76 8.76 71.98 0.63 -4.13 15 4 C 0.08 3.65 1.43 -12.29 -0.02 3.63 15 5 H 0.04 1.90 5.14 -2.39 -0.01 1.88 15 6 C -0.47 -26.24 6.82 25.60 0.17 -26.06 15 7 H 0.05 2.97 8.05 -2.91 -0.02 2.95 15 8 C 0.03 1.70 5.47 84.66 0.46 2.16 15 9 N -0.94 -57.90 13.96 21.45 0.30 -57.60 15 10 Si 0.92 46.64 27.39 68.60 1.88 48.52 15 11 H -0.29 -14.84 7.11 99.48 0.71 -14.13 15 12 H -0.28 -14.03 7.11 99.48 0.71 -13.33 15 13 H -0.25 -12.27 6.06 99.48 0.60 -11.66 15 14 C 0.09 4.24 5.00 43.10 0.22 4.46 15 15 C -0.28 -11.53 10.02 21.99 0.22 -11.31 15 16 C 0.06 1.93 11.99 83.54 1.00 2.93 15 17 N -0.48 -15.00 7.36 -57.59 -0.42 -15.43 15 18 H 0.45 9.73 8.96 -213.34 -1.91 7.82 15 19 N -0.35 -14.69 12.27 -47.38 -0.58 -15.27 15 20 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.07 1.96 8.14 -2.38 -0.02 1.94 15 22 H 0.04 1.51 7.03 -2.39 -0.02 1.50 15 23 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.07 2.04 8.14 -2.38 -0.02 2.02 15 25 H 0.04 1.59 8.14 -2.38 -0.02 1.57 15 26 H 0.04 1.89 7.28 -2.39 -0.02 1.88 15 27 H 0.26 15.40 8.31 -92.70 -0.77 14.63 15 28 H 0.13 5.54 8.00 -2.91 -0.02 5.52 15 29 H 0.22 4.01 8.06 -2.92 -0.02 3.99 15 Total: -1.00 -68.25 243.79 3.60 -64.65 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -0.88 Total: 10.40 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 3.31 Total: -35.28 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -0.71 Total: -88.30 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.88 Total: 48.52 kcal Total: -68.25 3.60 -64.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260503022.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.478 kcal (2) G-P(sol) polarization free energy of solvation -68.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds