Wall clock time and date at job start Mon Mar 30 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46919 * 2 1 4 4 C 1.52995 * 109.47641 * 120.00367 * 2 1 3 5 5 H 1.09004 * 109.46962 * 301.63976 * 4 2 1 6 6 C 1.50696 * 109.47555 * 181.63097 * 4 2 1 7 7 H 1.07998 * 119.99952 * 275.48232 * 6 4 2 8 8 C 1.37877 * 119.99596 * 95.47880 * 6 4 2 9 9 N 1.31513 * 120.00267 * 6.85022 * 8 6 4 10 10 Si 1.86804 * 119.99924 * 186.84062 * 8 6 4 11 11 H 1.48501 * 109.46859 * 90.00320 * 10 8 6 12 12 H 1.48495 * 109.47380 * 210.00368 * 10 8 6 13 13 H 1.48497 * 109.47037 * 330.00547 * 10 8 6 14 14 C 1.50699 * 109.46930 * 61.62888 * 4 2 1 15 15 C 1.34670 * 126.59356 * 34.98164 * 14 4 2 16 16 N 1.34130 * 108.02534 * 180.24507 * 15 14 4 17 17 C 1.30499 * 109.24979 * 359.61942 * 16 15 14 18 18 N 1.35037 * 108.70358 * 0.37960 * 17 16 15 19 19 H 0.97005 * 126.39845 * 179.77070 * 18 17 16 20 20 H 1.08999 * 109.47418 * 299.99442 * 1 2 3 21 21 H 1.08998 * 109.47617 * 60.00025 * 1 2 3 22 22 H 1.09005 * 109.47150 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47034 * 240.00448 * 2 1 3 24 24 H 1.09002 * 109.47050 * 185.87571 * 3 2 1 25 25 H 1.08993 * 109.47407 * 305.87715 * 3 2 1 26 26 H 1.09005 * 109.46801 * 65.87857 * 3 2 1 27 27 H 0.97008 * 119.99853 * 180.02562 * 9 8 6 28 28 H 1.08010 * 125.98732 * 359.97438 * 15 14 4 29 29 H 1.08006 * 125.64252 * 180.15218 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6529 -0.2247 2.1389 6 6 3.5465 -0.6864 1.2695 7 1 4.1112 -1.4299 0.7268 8 6 4.2036 0.2950 1.9809 9 7 3.5234 1.1175 2.7492 10 14 6.0604 0.4561 1.8536 11 1 6.4019 1.3805 0.7427 12 1 6.5991 0.9940 3.1286 13 1 6.6559 -0.8780 1.5883 14 6 1.5710 -2.1533 1.2290 15 6 1.4246 -2.9349 0.1421 16 7 0.9828 -4.1340 0.5497 17 6 0.8577 -4.1276 1.8487 18 7 1.2115 -2.9095 2.3118 19 1 1.2111 -2.6237 3.2388 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1248 1.4443 -0.1052 25 1 1.5932 1.9858 -0.8326 26 1 1.7650 1.9250 0.9380 27 1 3.9858 1.8081 3.2495 28 1 1.6235 -2.6454 -0.8792 29 1 0.5227 -4.9579 2.4528 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260512513.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:52 Heat of formation + Delta-G solvation = 34.158284 kcal Electronic energy + Delta-G solvation = -12411.548680 eV Core-core repulsion = 10334.877545 eV Total energy + Delta-G solvation = -2076.671135 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.14498 -35.91614 -32.20614 -31.59948 -29.39723 -26.77374 -25.64683 -23.17504 -20.66531 -20.40951 -18.58931 -17.04232 -16.44954 -14.57965 -14.06077 -13.69508 -13.47658 -12.92940 -12.69840 -12.53901 -11.82191 -11.58209 -11.17153 -10.96791 -10.74904 -10.20057 -9.99430 -9.86192 -9.60392 -9.35375 -9.04231 -8.88258 -8.53228 -7.33384 -6.13111 -4.15373 3.03584 3.24807 3.32000 3.36865 3.99614 4.03412 4.37810 5.16968 5.38874 5.89101 6.09381 6.14194 6.19236 6.40678 6.57400 6.65159 6.78005 6.84316 6.88888 7.05341 7.27104 7.41318 7.61402 7.68654 7.76789 7.82003 8.19613 8.30978 8.86892 8.93352 9.47138 10.93524 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.034795 B = 0.014219 C = 0.011549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.523357 B = 1968.752538 C = 2423.794248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.119 4.119 4 C 0.100 3.900 5 H 0.066 0.934 6 C -0.506 4.506 7 H 0.057 0.943 8 C 0.071 3.929 9 N -0.888 5.888 10 Si 0.888 3.112 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.056 3.944 15 C -0.070 4.070 16 N -0.500 5.500 17 C 0.135 3.865 18 N -0.569 5.569 19 H 0.414 0.586 20 H 0.043 0.957 21 H 0.037 0.963 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.019 0.981 26 H 0.057 0.943 27 H 0.262 0.738 28 H 0.157 0.843 29 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -2.166 -0.301 4.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.177 4.177 4 C 0.080 3.920 5 H 0.084 0.916 6 C -0.544 4.544 7 H 0.075 0.925 8 C -0.132 4.132 9 N -0.526 5.526 10 Si 0.716 3.284 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.061 4.061 15 C -0.216 4.216 16 N -0.220 5.220 17 C -0.147 4.147 18 N -0.172 5.172 19 H 0.251 0.749 20 H 0.063 0.937 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.174 0.826 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.009 -2.714 -0.746 4.899 hybrid contribution 1.256 0.844 1.014 1.822 sum -2.753 -1.871 0.269 3.339 Atomic orbital electron populations 1.21935 0.97955 1.00535 0.99944 1.21110 0.92346 0.96727 0.99144 1.21551 1.01403 0.95230 0.99494 1.17679 0.95502 0.82853 0.95936 0.91558 1.20969 0.89936 1.12740 1.30742 0.92512 1.24908 0.98105 0.95797 0.94367 1.69909 1.35610 1.19140 1.27911 0.86641 0.85718 0.78513 0.77521 1.20369 1.21309 1.19902 1.22456 0.99891 0.97869 0.85930 1.21788 1.10735 0.90334 0.98711 1.70067 1.18707 1.23512 1.09722 1.24518 1.08645 0.89480 0.92076 1.43273 1.51654 1.12196 1.10093 0.74944 0.93745 0.94400 0.93426 0.92958 0.92295 0.96211 0.92374 0.92801 0.82592 0.79077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.94 37.15 0.33 -2.40 15 2 C -0.07 -1.56 2.16 -90.63 -0.20 -1.75 15 3 C -0.12 -2.56 8.15 37.16 0.30 -2.26 15 4 C 0.10 2.33 2.01 -92.93 -0.19 2.14 15 5 H 0.07 1.68 7.21 -51.93 -0.37 1.31 15 6 C -0.51 -13.05 7.50 -34.44 -0.26 -13.31 15 7 H 0.06 1.53 7.82 -52.49 -0.41 1.12 15 8 C 0.07 1.83 4.32 -17.82 -0.08 1.75 15 9 N -0.89 -23.54 12.03 55.43 0.67 -22.87 15 10 Si 0.89 20.53 29.54 -169.99 -5.02 15.50 15 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 14 C 0.06 1.21 5.25 -81.60 -0.43 0.78 15 15 C -0.07 -1.51 10.25 -17.81 -0.18 -1.69 15 16 N -0.50 -10.41 11.25 -14.66 -0.16 -10.57 15 17 C 0.13 2.39 13.04 -90.38 -1.18 1.21 15 18 N -0.57 -10.59 6.15 -10.30 -0.06 -10.66 15 19 H 0.41 6.68 8.96 -40.82 -0.37 6.31 15 20 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 22 H 0.05 0.89 6.66 -51.93 -0.35 0.55 15 23 H 0.05 1.10 7.23 -51.93 -0.38 0.73 15 24 H 0.06 1.37 6.83 -51.93 -0.35 1.01 15 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 26 H 0.06 1.33 7.78 -51.93 -0.40 0.92 15 27 H 0.26 6.72 8.31 -40.82 -0.34 6.38 15 28 H 0.16 3.22 7.35 -52.48 -0.39 2.84 15 29 H 0.19 2.48 8.06 -52.48 -0.42 2.06 15 LS Contribution 242.56 15.07 3.66 3.66 Total: -1.00 -28.25 242.56 -6.64 -34.89 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -3.84 Total: 5.58 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.87 Total: -15.53 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.44 Total: -44.10 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.25 -6.64 -34.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260512513.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.047 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds