Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34664 * 125.99137 * 2 1 4 4 N 1.36882 * 106.81945 * 179.85270 * 3 2 1 5 5 C 1.46493 * 126.39724 * 180.12455 * 4 3 2 6 6 C 1.35042 * 107.20292 * 0.41147 * 4 3 2 7 7 C 1.50696 * 125.64941 * 179.72023 * 6 4 3 8 8 H 1.08999 * 109.47380 * 0.02562 * 7 6 4 9 9 C 1.53002 * 109.47536 * 240.00091 * 7 6 4 10 10 C 1.50706 * 109.47141 * 120.00094 * 7 6 4 11 11 H 1.08003 * 119.99790 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00030 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00160 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 120.00083 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46921 * 90.00043 * 14 12 10 16 16 H 1.48497 * 109.47193 * 210.00372 * 14 12 10 17 17 H 1.48500 * 109.46932 * 330.00790 * 14 12 10 18 18 N 1.30502 * 108.70119 * 359.74243 * 6 4 3 19 19 H 1.09001 * 109.46953 * 269.71079 * 1 2 3 20 20 H 1.09000 * 109.47318 * 29.70677 * 1 2 3 21 21 H 1.09000 * 109.47161 * 149.71308 * 1 2 3 22 22 H 1.08006 * 126.58698 * 359.96719 * 3 2 1 23 23 H 1.09001 * 109.47223 * 270.34129 * 5 4 3 24 24 H 1.09003 * 109.47590 * 30.34388 * 5 4 3 25 25 H 1.09001 * 109.47506 * 150.34344 * 5 4 3 26 26 H 1.08991 * 109.47301 * 180.02562 * 9 7 6 27 27 H 1.08999 * 109.46976 * 300.00480 * 9 7 6 28 28 H 1.09007 * 109.46819 * 59.99786 * 9 7 6 29 29 H 0.97003 * 120.00277 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6400 0.0034 5 6 4.7996 1.4683 0.0072 6 6 3.5450 -0.7096 -0.0040 7 6 4.7386 -1.6294 -0.0095 8 1 5.6537 -1.0372 -0.0062 9 6 4.7019 -2.5052 -1.2635 10 6 4.7034 -2.5054 1.2163 11 1 3.8971 -2.4063 1.9279 12 6 5.7001 -3.4341 1.4287 13 7 6.6817 -3.5552 0.5620 14 14 5.6569 -4.5196 2.9484 15 1 4.9042 -5.7637 2.6469 16 1 7.0443 -4.8652 3.3495 17 1 4.9876 -3.7926 4.0570 18 7 2.2952 -1.0853 -0.0059 19 1 -0.3633 -0.0052 1.0277 20 1 -0.3634 0.8926 -0.5093 21 1 -0.3633 -0.8874 -0.5183 22 1 1.9751 2.1201 -0.0005 23 1 5.0987 1.6794 -1.0195 24 1 4.5965 2.4051 0.5263 25 1 5.6029 0.9370 0.5176 26 1 5.5650 -3.1707 -1.2672 27 1 3.7868 -3.0974 -1.2664 28 1 4.7274 -1.8715 -2.1501 29 1 7.3827 -4.2088 0.7112 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260612512.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = 46.988948 kcal Electronic energy + Delta-G solvation = -12174.180472 eV Core-core repulsion = 10098.065716 eV Total energy + Delta-G solvation = -2076.114756 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.26015 -34.34688 -33.57612 -31.20186 -29.51935 -27.13429 -25.20143 -24.95660 -21.76117 -19.62844 -18.67383 -16.25815 -15.86490 -14.97563 -14.59137 -13.77457 -13.24527 -13.04362 -12.63775 -12.24670 -12.01301 -11.86161 -11.64304 -11.38615 -10.90233 -10.72778 -10.40946 -10.10567 -9.80277 -9.07060 -8.90637 -8.69971 -8.37684 -7.34965 -6.01291 -4.05740 2.82654 3.34006 3.39831 3.44294 3.57502 4.01713 4.47590 5.20760 5.27874 5.36902 5.56000 5.57360 5.80704 5.85428 6.02157 6.11200 6.34716 6.51234 6.86073 6.95057 7.14042 7.21352 7.52053 7.64467 7.87494 7.98919 8.15172 8.37124 8.95932 9.13629 9.57976 11.05048 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.041090 B = 0.011310 C = 0.010289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.260508 B = 2475.092902 C = 2720.636236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.011 4.011 3 C -0.097 4.097 4 N -0.471 5.471 5 C 0.077 3.923 6 C 0.267 3.733 7 C 0.119 3.881 8 H 0.038 0.962 9 C -0.126 4.126 10 C -0.496 4.496 11 H 0.060 0.940 12 C 0.061 3.939 13 N -0.894 5.894 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.275 1.275 18 N -0.493 5.493 19 H 0.059 0.941 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.159 0.841 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.005 0.995 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 8.719 -1.382 9.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.141 4.141 3 C -0.228 4.228 4 N -0.154 5.154 5 C -0.066 4.066 6 C 0.004 3.996 7 C 0.099 3.901 8 H 0.056 0.944 9 C -0.185 4.185 10 C -0.535 4.535 11 H 0.079 0.921 12 C -0.140 4.140 13 N -0.534 5.534 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.213 1.213 17 H -0.200 1.200 18 N -0.212 5.212 19 H 0.078 0.922 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.177 0.823 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.024 0.976 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.282 7.929 -1.408 9.120 hybrid contribution 0.310 0.437 0.819 0.979 sum -3.972 8.366 -0.589 9.280 Atomic orbital electron populations 1.19904 0.88817 1.01623 1.01341 1.20695 0.96073 0.89413 1.07912 1.22085 0.83779 0.99436 1.17523 1.45403 1.06125 1.07860 1.55963 1.21904 0.86889 0.95128 1.02722 1.24576 0.96164 0.80437 0.98413 1.17427 0.85723 0.90599 0.96393 0.94411 1.21705 1.03029 0.99775 0.93985 1.20989 1.08633 1.18450 1.05412 0.92145 1.24919 0.95227 0.97044 0.96830 1.69874 1.12261 1.35776 1.35446 0.86479 0.76992 0.80893 0.83000 1.20488 1.21278 1.19970 1.70218 1.00174 1.28976 1.21795 0.92196 0.92312 0.91698 0.82348 0.91420 0.90735 0.88931 0.89248 0.94104 0.97620 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.42 36.01 0.38 -0.54 15 2 C -0.01 -0.23 7.09 -82.85 -0.59 -0.82 15 3 C -0.10 -1.78 11.49 -16.56 -0.19 -1.97 15 4 N -0.47 -9.40 3.15 -121.28 -0.38 -9.78 15 5 C 0.08 1.16 10.83 59.84 0.65 1.81 15 6 C 0.27 6.43 6.35 -155.42 -0.99 5.44 15 7 C 0.12 3.07 2.63 -92.92 -0.24 2.83 15 8 H 0.04 0.98 6.73 -51.93 -0.35 0.63 15 9 C -0.13 -3.20 8.95 37.16 0.33 -2.87 15 10 C -0.50 -14.06 8.55 -34.44 -0.29 -14.35 15 11 H 0.06 1.79 7.74 -52.48 -0.41 1.38 15 12 C 0.06 1.69 5.30 -17.82 -0.09 1.59 15 13 N -0.89 -25.22 11.32 55.43 0.63 -24.59 15 14 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 15 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 18 N -0.49 -12.12 11.25 -7.07 -0.08 -12.20 15 19 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.16 2.24 8.06 -52.48 -0.42 1.82 15 23 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 24 H 0.07 0.89 8.14 -51.93 -0.42 0.46 15 25 H 0.09 1.47 7.05 -51.93 -0.37 1.11 15 26 H 0.09 2.40 6.07 -51.93 -0.32 2.08 15 27 H 0.04 1.06 8.14 -51.93 -0.42 0.63 15 28 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 15 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 LS Contribution 249.13 15.07 3.75 3.75 Total: -1.00 -31.56 249.13 -6.10 -37.65 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -3.95 Total: -2.66 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.04 Total: -8.88 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.17 Total: -46.58 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.56 -6.10 -37.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260612512.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.643 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds