Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34664 * 125.99137 * 2 1 4 4 N 1.36882 * 106.81945 * 179.85270 * 3 2 1 5 5 C 1.46493 * 126.39724 * 180.12455 * 4 3 2 6 6 C 1.35042 * 107.20292 * 0.41147 * 4 3 2 7 7 C 1.50696 * 125.64941 * 179.72023 * 6 4 3 8 8 H 1.08999 * 109.47380 * 0.02562 * 7 6 4 9 9 C 1.53002 * 109.47536 * 240.00091 * 7 6 4 10 10 C 1.50706 * 109.47141 * 120.00094 * 7 6 4 11 11 H 1.08003 * 119.99790 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00030 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00160 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 120.00083 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46921 * 90.00043 * 14 12 10 16 16 H 1.48497 * 109.47193 * 210.00372 * 14 12 10 17 17 H 1.48500 * 109.46932 * 330.00790 * 14 12 10 18 18 N 1.30502 * 108.70119 * 359.74243 * 6 4 3 19 19 H 1.09001 * 109.46953 * 269.71079 * 1 2 3 20 20 H 1.09000 * 109.47318 * 29.70677 * 1 2 3 21 21 H 1.09000 * 109.47161 * 149.71308 * 1 2 3 22 22 H 1.08006 * 126.58698 * 359.96719 * 3 2 1 23 23 H 1.09001 * 109.47223 * 270.34129 * 5 4 3 24 24 H 1.09003 * 109.47590 * 30.34388 * 5 4 3 25 25 H 1.09001 * 109.47506 * 150.34344 * 5 4 3 26 26 H 1.08991 * 109.47301 * 180.02562 * 9 7 6 27 27 H 1.08999 * 109.46976 * 300.00480 * 9 7 6 28 28 H 1.09007 * 109.46819 * 59.99786 * 9 7 6 29 29 H 0.97003 * 120.00277 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6400 0.0034 5 6 4.7996 1.4683 0.0072 6 6 3.5450 -0.7096 -0.0040 7 6 4.7386 -1.6294 -0.0095 8 1 5.6537 -1.0372 -0.0062 9 6 4.7019 -2.5052 -1.2635 10 6 4.7034 -2.5054 1.2163 11 1 3.8971 -2.4063 1.9279 12 6 5.7001 -3.4341 1.4287 13 7 6.6817 -3.5552 0.5620 14 14 5.6569 -4.5196 2.9484 15 1 4.9042 -5.7637 2.6469 16 1 7.0443 -4.8652 3.3495 17 1 4.9876 -3.7926 4.0570 18 7 2.2952 -1.0853 -0.0059 19 1 -0.3633 -0.0052 1.0277 20 1 -0.3634 0.8926 -0.5093 21 1 -0.3633 -0.8874 -0.5183 22 1 1.9751 2.1201 -0.0005 23 1 5.0987 1.6794 -1.0195 24 1 4.5965 2.4051 0.5263 25 1 5.6029 0.9370 0.5176 26 1 5.5650 -3.1707 -1.2672 27 1 3.7868 -3.0974 -1.2664 28 1 4.7274 -1.8715 -2.1501 29 1 7.3827 -4.2088 0.7112 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260612512.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = 27.492176 kcal Electronic energy + Delta-G solvation = -12175.025916 eV Core-core repulsion = 10098.065716 eV Total energy + Delta-G solvation = -2076.960199 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.82432 -36.33848 -35.05735 -33.12060 -31.09018 -28.54573 -27.26960 -26.50332 -23.58856 -21.14363 -20.40779 -18.28004 -17.48697 -16.55194 -16.44232 -15.33907 -14.95346 -14.44223 -14.25582 -13.76754 -13.54190 -13.32227 -13.13421 -12.94447 -12.84111 -12.61398 -12.36262 -12.20086 -11.76214 -11.11051 -10.58430 -10.50748 -10.27304 -8.89933 -8.13334 -6.25662 1.30471 1.40398 1.43064 1.52624 2.14925 2.34292 2.48522 3.14139 3.86814 4.04138 4.17406 4.43219 4.52278 4.60102 4.65656 4.79159 4.95176 4.97395 5.08338 5.14539 5.23544 5.50185 5.56808 5.78043 5.91457 6.15270 6.25075 6.54158 6.76755 7.40969 7.52617 8.91353 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.041090 B = 0.011310 C = 0.010289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.260508 B = 2475.092902 C = 2720.636236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.046 4.046 3 C -0.073 4.073 4 N -0.470 5.470 5 C 0.069 3.931 6 C 0.226 3.774 7 C 0.122 3.878 8 H 0.030 0.970 9 C -0.113 4.113 10 C -0.517 4.517 11 H 0.038 0.962 12 C 0.021 3.979 13 N -0.912 5.912 14 Si 0.957 3.043 15 H -0.277 1.277 16 H -0.273 1.273 17 H -0.276 1.276 18 N -0.534 5.534 19 H 0.067 0.933 20 H 0.094 0.906 21 H 0.054 0.946 22 H 0.210 0.790 23 H 0.087 0.913 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 10.417 -1.093 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.175 4.175 3 C -0.205 4.205 4 N -0.152 5.152 5 C -0.072 4.072 6 C -0.037 4.037 7 C 0.102 3.898 8 H 0.048 0.952 9 C -0.171 4.171 10 C -0.556 4.556 11 H 0.056 0.944 12 C -0.179 4.179 13 N -0.552 5.552 14 Si 0.782 3.218 15 H -0.203 1.203 16 H -0.198 1.198 17 H -0.201 1.201 18 N -0.254 5.254 19 H 0.086 0.914 20 H 0.113 0.887 21 H 0.073 0.927 22 H 0.226 0.774 23 H 0.106 0.894 24 H 0.132 0.868 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.808 9.642 -1.126 10.833 hybrid contribution 0.449 -0.006 0.705 0.836 sum -4.359 9.636 -0.421 10.585 Atomic orbital electron populations 1.19995 0.85931 1.02947 1.02257 1.21507 0.98162 0.88983 1.08888 1.22869 0.82538 1.01152 1.13941 1.45629 1.08140 1.06932 1.54454 1.22216 0.84890 0.95642 1.04466 1.23991 0.95484 0.82201 1.02050 1.17177 0.86654 0.90698 0.95315 0.95214 1.21516 1.01087 0.99519 0.95005 1.21106 1.08328 1.19834 1.06296 0.94411 1.25601 0.94809 0.97987 0.99463 1.69954 1.12514 1.36143 1.36555 0.85578 0.77506 0.79012 0.79671 1.20293 1.19837 1.20095 1.70095 1.01155 1.31787 1.22389 0.91378 0.88734 0.92666 0.77370 0.89404 0.86780 0.90575 0.91038 0.95827 0.95858 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.54 10.42 71.24 0.74 -0.80 15 2 C -0.05 -1.82 7.09 41.39 0.29 -1.52 15 3 C -0.07 -2.44 11.49 83.09 0.95 -1.49 15 4 N -0.47 -17.92 3.15 -537.63 -1.69 -19.61 15 5 C 0.07 1.92 10.83 127.77 1.38 3.31 15 6 C 0.23 10.93 6.35 138.13 0.88 11.81 15 7 C 0.12 6.45 2.63 -12.28 -0.03 6.42 15 8 H 0.03 1.59 6.73 -2.39 -0.02 1.57 15 9 C -0.11 -5.86 8.95 71.98 0.64 -5.22 15 10 C -0.52 -30.11 8.55 25.60 0.22 -29.89 15 11 H 0.04 2.31 7.74 -2.91 -0.02 2.29 15 12 C 0.02 1.16 5.30 84.65 0.45 1.61 15 13 N -0.91 -51.98 11.32 21.45 0.24 -51.74 15 14 Si 0.96 44.91 29.54 68.60 2.03 46.94 15 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 17 H -0.28 -12.90 7.11 99.48 0.71 -12.20 15 18 N -0.53 -26.47 11.25 -176.29 -1.98 -28.45 15 19 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 20 H 0.09 1.99 8.14 -2.39 -0.02 1.97 15 21 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.21 4.69 8.06 -2.91 -0.02 4.67 15 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.11 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.08 2.37 7.05 -2.39 -0.02 2.35 15 26 H 0.07 3.93 6.07 -2.39 -0.01 3.92 15 27 H 0.02 1.24 8.14 -2.39 -0.02 1.22 15 28 H 0.02 1.07 8.14 -2.38 -0.02 1.05 15 29 H 0.27 14.27 8.31 -92.71 -0.77 13.50 15 Total: -1.00 -69.41 249.13 5.24 -64.17 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 1.12 Total: 4.46 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 5.53 Total: -15.77 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -3.44 Total: -99.80 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.41 5.24 -64.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260612512.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.662 kcal (2) G-P(sol) polarization free energy of solvation -69.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds