Wall clock time and date at job start Mon Mar 30 2020 02:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36342 * 125.63061 * 2 1 4 4 C 1.34855 * 108.21567 * 179.97438 * 3 2 1 5 5 C 1.40883 * 107.41805 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.29302 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47201 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47233 * 60.02460 * 6 5 4 9 9 H 1.08001 * 119.99926 * 275.17200 * 8 6 5 10 10 C 1.37877 * 119.99981 * 95.16368 * 8 6 5 11 11 N 1.31509 * 120.00137 * 354.69211 * 10 8 6 12 12 Si 1.86802 * 119.99842 * 174.96645 * 10 8 6 13 13 H 1.48502 * 109.47082 * 179.72741 * 12 10 8 14 14 H 1.48501 * 109.47193 * 299.72804 * 12 10 8 15 15 H 1.48508 * 109.46881 * 59.72578 * 12 10 8 16 16 C 1.52996 * 109.46876 * 300.02112 * 6 5 4 17 17 N 1.46899 * 109.47040 * 185.42687 * 16 6 5 18 18 C 1.34858 * 107.41932 * 0.22574 * 5 4 3 19 19 H 1.08995 * 109.47183 * 90.03240 * 1 2 3 20 20 H 1.09007 * 109.46790 * 210.02572 * 1 2 3 21 21 H 1.09000 * 109.47441 * 330.02289 * 1 2 3 22 22 H 1.08006 * 125.89363 * 0.02562 * 3 2 1 23 23 H 1.08003 * 126.29093 * 179.97438 * 4 3 2 24 24 H 0.97007 * 120.00017 * 179.97438 * 11 10 8 25 25 H 1.08995 * 109.47571 * 305.43124 * 16 6 5 26 26 H 1.09007 * 109.46831 * 65.43398 * 16 6 5 27 27 H 1.00905 * 111.00367 * 174.35014 * 17 16 6 28 28 H 1.00906 * 111.00050 * 298.29712 * 17 16 6 29 29 H 1.07999 * 125.89495 * 179.74922 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 0.0006 5 6 3.5461 -0.7043 0.0015 6 6 4.7608 -1.5962 0.0019 7 1 4.4455 -2.6396 0.0022 8 6 5.5862 -1.3206 1.2323 9 1 6.3036 -0.5133 1.2315 10 6 5.4252 -2.0988 2.3590 11 7 4.4806 -3.0130 2.3973 12 14 6.5440 -1.8493 3.8340 13 1 6.1633 -2.7992 4.9102 14 1 7.9529 -2.0937 3.4336 15 1 6.4050 -0.4567 4.3308 16 6 5.5987 -1.3172 -1.2474 17 7 6.7116 -2.2738 -1.3144 18 6 2.2594 -1.1081 -0.0035 19 1 -0.3633 -0.0006 -1.0276 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3634 0.8902 0.5135 22 1 1.9170 2.1326 0.0004 23 1 4.4165 1.3439 0.0003 24 1 4.3676 -3.5607 3.1899 25 1 4.9746 -1.4232 -2.1347 26 1 5.9943 -0.3025 -1.2005 27 1 7.2259 -2.1705 -2.1764 28 1 7.3208 -2.1762 -0.5160 29 1 1.9172 -2.1324 -0.0081 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260624603.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:34 Heat of formation + Delta-G solvation = 24.659236 kcal Electronic energy + Delta-G solvation = -12113.705404 eV Core-core repulsion = 10036.622359 eV Total energy + Delta-G solvation = -2077.083045 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.67351 -36.93342 -34.08846 -33.41430 -30.62137 -28.83229 -26.71508 -25.73155 -22.45355 -20.80311 -20.05886 -18.33497 -17.46755 -16.58392 -16.06966 -15.79563 -15.35319 -14.59837 -14.47369 -13.70988 -13.39250 -13.22359 -13.19589 -12.90243 -12.78072 -12.54947 -12.36516 -12.04648 -11.16199 -10.98420 -10.45239 -9.29166 -8.98191 -8.59759 -7.97233 -6.05548 1.43781 1.45164 1.51950 1.66346 2.42228 2.45715 2.58297 3.34134 4.10073 4.19793 4.40021 4.54374 4.59149 4.72966 4.74122 4.76577 5.05527 5.25980 5.31979 5.57973 5.76277 5.87430 6.06796 6.35362 6.51466 6.63767 6.70073 6.90458 6.97587 7.10636 7.57911 9.09341 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.031505 B = 0.013176 C = 0.010788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.541886 B = 2124.575312 C = 2594.949332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.462 5.462 3 C -0.022 4.022 4 C -0.224 4.224 5 C -0.130 4.130 6 C 0.099 3.901 7 H 0.021 0.979 8 C -0.499 4.499 9 H 0.044 0.956 10 C 0.016 3.984 11 N -0.919 5.919 12 Si 0.947 3.053 13 H -0.290 1.290 14 H -0.266 1.266 15 H -0.278 1.278 16 C 0.092 3.908 17 N -0.850 5.850 18 C -0.055 4.055 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.099 0.901 22 H 0.190 0.810 23 H 0.119 0.881 24 H 0.255 0.745 25 H 0.046 0.954 26 H 0.009 0.991 27 H 0.337 0.663 28 H 0.343 0.657 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.299 6.647 -4.819 9.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.139 5.139 3 C -0.152 4.152 4 C -0.249 4.249 5 C -0.137 4.137 6 C 0.079 3.921 7 H 0.040 0.960 8 C -0.537 4.537 9 H 0.062 0.938 10 C -0.183 4.183 11 N -0.559 5.559 12 Si 0.773 3.227 13 H -0.215 1.215 14 H -0.191 1.191 15 H -0.204 1.204 16 C -0.038 4.038 17 N -0.380 5.380 18 C -0.183 4.183 19 H 0.101 0.899 20 H 0.098 0.902 21 H 0.118 0.882 22 H 0.206 0.794 23 H 0.137 0.863 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.027 0.973 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.349 5.935 -4.674 9.868 hybrid contribution 1.150 0.652 1.020 1.669 sum -5.199 6.587 -3.655 9.153 Atomic orbital electron populations 1.22150 0.75667 1.04920 1.03899 1.44045 1.07034 1.05255 1.57565 1.22063 0.89985 0.92249 1.10887 1.20795 0.96338 0.94759 1.13056 1.20257 0.94588 0.94889 1.03939 1.17239 0.89351 0.93608 0.91908 0.96038 1.21134 1.20017 1.14347 0.98239 0.93777 1.25650 0.96434 0.95275 1.00896 1.70093 1.33003 1.23461 1.29320 0.85801 0.80025 0.77396 0.79467 1.21536 1.19125 1.20400 1.21579 0.92756 0.91752 0.97762 1.58584 1.15318 1.56934 1.07153 1.21507 0.90813 0.91151 1.14839 0.89858 0.90227 0.88204 0.79352 0.86309 0.93608 0.93573 0.97286 0.85106 0.84407 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.72 11.12 127.77 1.42 3.14 15 2 N -0.46 -16.51 3.15 -547.88 -1.72 -18.24 15 3 C -0.02 -0.78 11.43 83.21 0.95 0.17 15 4 C -0.22 -9.76 10.51 22.14 0.23 -9.53 15 5 C -0.13 -6.38 4.81 -19.99 -0.10 -6.47 15 6 C 0.10 5.23 2.44 -12.29 -0.03 5.20 15 7 H 0.02 1.30 7.35 -2.39 -0.02 1.28 15 8 C -0.50 -28.11 7.32 25.60 0.19 -27.92 15 9 H 0.04 2.45 7.82 -2.91 -0.02 2.43 15 10 C 0.02 0.91 5.45 84.66 0.46 1.37 15 11 N -0.92 -55.82 12.84 21.45 0.28 -55.54 15 12 Si 0.95 45.18 29.54 68.60 2.03 47.21 15 13 H -0.29 -13.70 7.11 99.48 0.71 -13.00 15 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 15 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 16 C 0.09 4.16 6.08 86.30 0.52 4.69 15 17 N -0.85 -35.17 9.57 -186.72 -1.79 -36.95 15 18 C -0.06 -2.48 11.33 83.22 0.94 -1.54 15 19 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.08 1.78 8.14 -2.38 -0.02 1.76 15 21 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.19 4.91 8.06 -2.91 -0.02 4.88 15 23 H 0.12 5.04 8.06 -2.91 -0.02 5.02 15 24 H 0.26 14.86 8.31 -92.70 -0.77 14.09 15 25 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 26 H 0.01 0.40 8.14 -2.38 -0.02 0.38 15 27 H 0.34 11.20 9.08 -89.69 -0.81 10.39 15 28 H 0.34 14.67 8.24 -89.69 -0.74 13.94 15 29 H 0.14 6.39 8.06 -2.91 -0.02 6.36 15 Total: -1.00 -68.37 252.58 2.97 -65.40 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.41 Total: 29.02 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 4.59 Total: -30.90 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -3.24 Total: -110.73 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -68.37 2.97 -65.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624603.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.060 kcal (2) G-P(sol) polarization free energy of solvation -68.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds