Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36335 * 125.63397 * 2 1 4 4 C 1.34853 * 108.21688 * 179.76329 * 3 2 1 5 5 C 1.40897 * 107.41367 * 0.42734 * 4 3 2 6 6 C 1.50700 * 126.29039 * 179.82973 * 5 4 3 7 7 H 1.08996 * 109.47337 * 179.69515 * 6 5 4 8 8 C 1.50701 * 109.47282 * 299.69425 * 6 5 4 9 9 H 1.08000 * 120.00092 * 5.26701 * 8 6 5 10 10 C 1.37875 * 119.99892 * 185.26955 * 8 6 5 11 11 N 1.31516 * 119.99789 * 196.78414 * 10 8 6 12 12 Si 1.86793 * 120.00317 * 16.78552 * 10 8 6 13 13 H 1.48500 * 109.47388 * 179.97438 * 12 10 8 14 14 H 1.48498 * 109.47034 * 59.99635 * 12 10 8 15 15 H 1.48500 * 109.47203 * 300.00198 * 12 10 8 16 16 C 1.53003 * 109.46867 * 59.69100 * 6 5 4 17 17 N 1.46901 * 109.47191 * 65.80475 * 16 6 5 18 18 C 1.34844 * 107.41554 * 359.57252 * 5 4 3 19 19 H 1.08999 * 109.46698 * 269.95674 * 1 2 3 20 20 H 1.08996 * 109.46679 * 29.95448 * 1 2 3 21 21 H 1.08995 * 109.47409 * 149.95947 * 1 2 3 22 22 H 1.07999 * 125.89433 * 0.03394 * 3 2 1 23 23 H 1.07999 * 126.29447 * 180.29753 * 4 3 2 24 24 H 0.97000 * 119.99997 * 354.13054 * 11 10 8 25 25 H 1.09006 * 109.46890 * 185.79681 * 16 6 5 26 26 H 1.08996 * 109.47247 * 305.80210 * 16 6 5 27 27 H 1.00907 * 111.00114 * 56.04024 * 17 16 6 28 28 H 1.00895 * 110.99923 * 179.97438 * 17 16 6 29 29 H 1.08003 * 125.88669 * 180.24153 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 0.0053 5 6 3.5460 -0.7045 -0.0013 6 6 4.7607 -1.5965 -0.0024 7 1 4.4453 -2.6399 -0.0026 8 6 5.5854 -1.3208 -1.2332 9 1 5.3090 -0.5171 -1.8995 10 6 6.6929 -2.0946 -1.5085 11 7 7.5924 -1.6723 -2.3700 12 14 6.9156 -3.7427 -0.6580 13 1 8.1765 -4.3738 -1.1240 14 1 5.7691 -4.6277 -0.9857 15 1 6.9780 -3.5371 0.8114 16 6 5.5993 -1.3175 1.2465 17 7 4.8453 -1.7173 2.4422 18 6 2.2594 -1.1081 -0.0008 19 1 -0.3633 -0.0008 1.0277 20 1 -0.3632 0.8904 -0.5131 21 1 -0.3634 -0.8896 -0.5144 22 1 1.9172 2.1324 0.0005 23 1 4.4166 1.3436 0.0112 24 1 7.4362 -0.8588 -2.8746 25 1 6.5276 -1.8866 1.1954 26 1 5.8281 -0.2531 1.3003 27 1 4.5653 -2.6851 2.3863 28 1 5.3784 -1.5432 3.2809 29 1 1.9172 -2.1325 -0.0013 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624634.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = 48.219706 kcal Electronic energy + Delta-G solvation = -12148.165024 eV Core-core repulsion = 10072.103638 eV Total energy + Delta-G solvation = -2076.061386 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.29289 -35.38724 -32.25448 -32.03808 -29.25503 -27.48280 -25.28037 -23.00837 -21.03628 -19.48451 -18.27151 -17.27029 -16.24844 -14.73388 -14.60376 -14.26553 -13.37665 -13.30079 -13.11584 -12.37823 -12.23376 -11.88724 -11.67230 -11.30056 -10.81694 -10.66656 -10.35249 -9.91322 -9.66112 -8.87667 -8.14877 -7.73664 -7.54880 -7.14000 -6.30873 -3.93864 3.06518 3.38218 3.45362 3.62625 3.65351 4.10791 4.54391 5.05997 5.30571 5.38393 5.55125 5.60635 5.64171 5.95881 6.29323 6.52451 6.67400 6.75201 6.92958 7.17256 7.31025 7.61546 7.82935 8.00300 8.16065 8.18050 8.20935 8.42582 8.51663 9.06682 9.73959 11.04724 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.044187 B = 0.011646 C = 0.010786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.517584 B = 2403.741641 C = 2595.360447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.464 5.464 3 C -0.040 4.040 4 C -0.179 4.179 5 C -0.079 4.079 6 C 0.086 3.914 7 H 0.017 0.983 8 C -0.581 4.581 9 H 0.058 0.942 10 C 0.025 3.975 11 N -0.912 5.912 12 Si 1.050 2.950 13 H -0.288 1.288 14 H -0.285 1.285 15 H -0.279 1.279 16 C 0.062 3.938 17 N -0.850 5.850 18 C -0.047 4.047 19 H 0.061 0.939 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.147 0.853 23 H 0.124 0.876 24 H 0.267 0.733 25 H 0.026 0.974 26 H 0.060 0.940 27 H 0.327 0.673 28 H 0.321 0.679 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 0.921 6.778 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.143 5.143 3 C -0.169 4.169 4 C -0.205 4.205 5 C -0.085 4.085 6 C 0.065 3.935 7 H 0.035 0.965 8 C -0.619 4.619 9 H 0.077 0.923 10 C -0.179 4.179 11 N -0.547 5.547 12 Si 0.880 3.120 13 H -0.214 1.214 14 H -0.211 1.211 15 H -0.206 1.206 16 C -0.068 4.068 17 N -0.377 5.377 18 C -0.173 4.173 19 H 0.079 0.921 20 H 0.091 0.909 21 H 0.092 0.908 22 H 0.164 0.836 23 H 0.142 0.858 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.593 0.209 6.691 12.531 hybrid contribution -0.358 0.717 -0.092 0.806 sum -10.950 0.926 6.600 12.819 Atomic orbital electron populations 1.21775 0.79027 1.03161 1.01984 1.43661 1.04919 1.06309 1.59451 1.21522 0.90828 0.90625 1.13893 1.20696 0.94846 0.95483 1.09447 1.19549 0.93207 0.93815 1.01919 1.17541 0.89803 0.92798 0.93316 0.96494 1.22012 1.13070 1.18597 1.08260 0.92345 1.25773 0.91868 1.02446 0.97832 1.70839 1.32004 1.25339 1.26566 0.83990 0.76079 0.76087 0.75890 1.21399 1.21127 1.20608 1.22436 0.94842 0.99871 0.89677 1.58940 1.48006 1.26005 1.04735 1.21424 0.90418 0.90368 1.15134 0.92083 0.90938 0.90762 0.83563 0.85816 0.92311 0.95644 0.92116 0.86254 0.86852 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 11.12 59.85 0.67 1.65 15 2 N -0.46 -8.14 3.15 -124.53 -0.39 -8.54 15 3 C -0.04 -0.75 11.43 -16.75 -0.19 -0.94 15 4 C -0.18 -3.92 10.27 -39.78 -0.41 -4.33 15 5 C -0.08 -1.81 4.51 -104.82 -0.47 -2.29 15 6 C 0.09 2.12 1.86 -92.92 -0.17 1.95 15 7 H 0.02 0.42 6.80 -51.93 -0.35 0.07 15 8 C -0.58 -16.79 8.71 -34.44 -0.30 -17.09 15 9 H 0.06 1.85 7.95 -52.49 -0.42 1.43 15 10 C 0.02 0.72 5.31 -17.82 -0.09 0.63 15 11 N -0.91 -28.49 13.69 55.43 0.76 -27.73 15 12 Si 1.05 25.58 26.28 -169.99 -4.47 21.11 15 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 15 H -0.28 -6.26 5.68 56.52 0.32 -5.94 15 16 C 0.06 1.41 5.79 -3.82 -0.02 1.39 15 17 N -0.85 -16.19 9.36 -10.37 -0.10 -16.28 15 18 C -0.05 -0.95 11.33 -16.75 -0.19 -1.14 15 19 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 20 H 0.07 0.72 8.14 -51.93 -0.42 0.29 15 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.15 2.18 8.06 -52.49 -0.42 1.76 15 23 H 0.12 2.73 8.06 -52.49 -0.42 2.31 15 24 H 0.27 8.34 8.73 -40.82 -0.36 7.98 15 25 H 0.03 0.61 4.74 -51.93 -0.25 0.36 15 26 H 0.06 1.44 7.87 -51.93 -0.41 1.03 15 27 H 0.33 5.82 8.99 -39.29 -0.35 5.47 15 28 H 0.32 5.28 9.08 -39.29 -0.36 4.93 15 29 H 0.15 2.66 8.06 -52.48 -0.42 2.24 15 LS Contribution 245.46 15.07 3.70 3.70 Total: -1.00 -32.73 245.46 -5.59 -38.32 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -3.90 Total: 9.59 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.19 Total: -20.17 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.27 Total: -52.55 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.47 Total: 21.11 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.73 -5.59 -38.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624634.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.542 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds