Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36335 * 125.63397 * 2 1 4 4 C 1.34853 * 108.21688 * 179.76329 * 3 2 1 5 5 C 1.40897 * 107.41367 * 0.42734 * 4 3 2 6 6 C 1.50700 * 126.29039 * 179.82973 * 5 4 3 7 7 H 1.08996 * 109.47337 * 179.69515 * 6 5 4 8 8 C 1.50701 * 109.47282 * 299.69425 * 6 5 4 9 9 H 1.08000 * 120.00092 * 5.26701 * 8 6 5 10 10 C 1.37875 * 119.99892 * 185.26955 * 8 6 5 11 11 N 1.31516 * 119.99789 * 196.78414 * 10 8 6 12 12 Si 1.86793 * 120.00317 * 16.78552 * 10 8 6 13 13 H 1.48500 * 109.47388 * 179.97438 * 12 10 8 14 14 H 1.48498 * 109.47034 * 59.99635 * 12 10 8 15 15 H 1.48500 * 109.47203 * 300.00198 * 12 10 8 16 16 C 1.53003 * 109.46867 * 59.69100 * 6 5 4 17 17 N 1.46901 * 109.47191 * 65.80475 * 16 6 5 18 18 C 1.34844 * 107.41554 * 359.57252 * 5 4 3 19 19 H 1.08999 * 109.46698 * 269.95674 * 1 2 3 20 20 H 1.08996 * 109.46679 * 29.95448 * 1 2 3 21 21 H 1.08995 * 109.47409 * 149.95947 * 1 2 3 22 22 H 1.07999 * 125.89433 * 0.03394 * 3 2 1 23 23 H 1.07999 * 126.29447 * 180.29753 * 4 3 2 24 24 H 0.97000 * 119.99997 * 354.13054 * 11 10 8 25 25 H 1.09006 * 109.46890 * 185.79681 * 16 6 5 26 26 H 1.08996 * 109.47247 * 305.80210 * 16 6 5 27 27 H 1.00907 * 111.00114 * 56.04024 * 17 16 6 28 28 H 1.00895 * 110.99923 * 179.97438 * 17 16 6 29 29 H 1.08003 * 125.88669 * 180.24153 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 0.0053 5 6 3.5460 -0.7045 -0.0013 6 6 4.7607 -1.5965 -0.0024 7 1 4.4453 -2.6399 -0.0026 8 6 5.5854 -1.3208 -1.2332 9 1 5.3090 -0.5171 -1.8995 10 6 6.6929 -2.0946 -1.5085 11 7 7.5924 -1.6723 -2.3700 12 14 6.9156 -3.7427 -0.6580 13 1 8.1765 -4.3738 -1.1240 14 1 5.7691 -4.6277 -0.9857 15 1 6.9780 -3.5371 0.8114 16 6 5.5993 -1.3175 1.2465 17 7 4.8453 -1.7173 2.4422 18 6 2.2594 -1.1081 -0.0008 19 1 -0.3633 -0.0008 1.0277 20 1 -0.3632 0.8904 -0.5131 21 1 -0.3634 -0.8896 -0.5144 22 1 1.9172 2.1324 0.0005 23 1 4.4166 1.3436 0.0112 24 1 7.4362 -0.8588 -2.8746 25 1 6.5276 -1.8866 1.1954 26 1 5.8281 -0.2531 1.3003 27 1 4.5653 -2.6851 2.3863 28 1 5.3784 -1.5432 3.2809 29 1 1.9172 -2.1325 -0.0013 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260624634.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = 23.967759 kcal Electronic energy + Delta-G solvation = -12149.216667 eV Core-core repulsion = 10072.103638 eV Total energy + Delta-G solvation = -2077.113030 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.78683 -37.20703 -34.37112 -33.45262 -30.97015 -29.07291 -26.65809 -25.01738 -22.83123 -21.00153 -19.99905 -19.34980 -17.74968 -16.35198 -16.09792 -15.80761 -15.11118 -15.05920 -14.59114 -14.32960 -13.54439 -13.23264 -13.18423 -12.97867 -12.62765 -12.51858 -12.11714 -11.79126 -11.52469 -11.04663 -10.39426 -9.35374 -9.10742 -8.84839 -8.49682 -6.29596 1.43177 1.53344 1.58809 1.72482 2.36841 2.42363 2.51071 3.09883 3.99520 4.13849 4.32841 4.44880 4.54975 4.55769 4.73527 4.75359 4.95745 4.97622 5.15086 5.44019 5.61372 5.86280 6.04886 6.08437 6.38463 6.44357 6.58395 6.64568 6.80939 6.84939 7.48774 8.68487 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.044187 B = 0.011646 C = 0.010786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.517584 B = 2403.741641 C = 2595.360447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.457 5.457 3 C -0.019 4.019 4 C -0.226 4.226 5 C -0.122 4.122 6 C 0.088 3.912 7 H 0.023 0.977 8 C -0.583 4.583 9 H 0.010 0.990 10 C -0.027 4.027 11 N -0.944 5.944 12 Si 1.092 2.908 13 H -0.292 1.292 14 H -0.262 1.262 15 H -0.246 1.246 16 C 0.076 3.924 17 N -0.842 5.842 18 C -0.045 4.045 19 H 0.082 0.918 20 H 0.096 0.904 21 H 0.090 0.910 22 H 0.185 0.815 23 H 0.101 0.899 24 H 0.248 0.752 25 H 0.015 0.985 26 H 0.040 0.960 27 H 0.339 0.661 28 H 0.340 0.660 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.246 -0.087 8.567 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.133 5.133 3 C -0.150 4.150 4 C -0.252 4.252 5 C -0.128 4.128 6 C 0.068 3.932 7 H 0.041 0.959 8 C -0.621 4.621 9 H 0.028 0.972 10 C -0.224 4.224 11 N -0.581 5.581 12 Si 0.913 3.087 13 H -0.218 1.218 14 H -0.187 1.187 15 H -0.171 1.171 16 C -0.055 4.055 17 N -0.371 5.371 18 C -0.174 4.174 19 H 0.100 0.900 20 H 0.115 0.885 21 H 0.109 0.891 22 H 0.202 0.798 23 H 0.119 0.881 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.058 0.942 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.153 -0.780 8.504 15.682 hybrid contribution 0.296 1.155 -0.681 1.373 sum -12.857 0.376 7.823 15.055 Atomic orbital electron populations 1.22198 0.75115 1.05294 1.04049 1.44007 1.07207 1.05065 1.57068 1.21942 0.89708 0.92487 1.10841 1.20719 0.96121 0.95349 1.13010 1.19546 0.93929 0.94178 1.05190 1.17391 0.90436 0.93468 0.91910 0.95947 1.22183 1.13848 1.16791 1.09316 0.97175 1.27330 0.91489 1.05741 0.97820 1.70983 1.33550 1.25178 1.28395 0.83494 0.76589 0.71712 0.76879 1.21817 1.18744 1.17103 1.22037 0.94298 0.98542 0.90628 1.58728 1.47498 1.26947 1.03958 1.21631 0.89880 0.91983 1.13864 0.89955 0.88508 0.89127 0.79753 0.88075 0.94254 0.96668 0.94160 0.84870 0.84774 0.81548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.39 11.12 127.77 1.42 2.81 15 2 N -0.46 -14.53 3.15 -547.90 -1.72 -16.25 15 3 C -0.02 -0.68 11.43 83.22 0.95 0.28 15 4 C -0.23 -10.06 10.27 22.14 0.23 -9.83 15 5 C -0.12 -5.62 4.51 -19.99 -0.09 -5.71 15 6 C 0.09 4.37 1.86 -12.28 -0.02 4.35 15 7 H 0.02 1.08 6.80 -2.39 -0.02 1.07 15 8 C -0.58 -35.03 8.71 25.60 0.22 -34.80 15 9 H 0.01 0.67 7.95 -2.91 -0.02 0.65 15 10 C -0.03 -1.64 5.31 84.65 0.45 -1.20 15 11 N -0.94 -61.36 13.69 21.45 0.29 -61.07 15 12 Si 1.09 51.02 26.28 68.60 1.80 52.82 15 13 H -0.29 -13.79 7.11 99.48 0.71 -13.08 15 14 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 15 H -0.25 -10.15 5.68 99.48 0.56 -9.59 15 16 C 0.08 3.43 5.79 86.30 0.50 3.93 15 17 N -0.84 -30.17 9.36 -186.71 -1.75 -31.91 15 18 C -0.05 -1.73 11.33 83.21 0.94 -0.79 15 19 H 0.08 1.29 8.14 -2.39 -0.02 1.27 15 20 H 0.10 1.41 8.14 -2.39 -0.02 1.39 15 21 H 0.09 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.19 4.85 8.06 -2.91 -0.02 4.83 15 23 H 0.10 4.77 8.06 -2.91 -0.02 4.75 15 24 H 0.25 16.52 8.73 -92.71 -0.81 15.71 15 25 H 0.02 0.72 4.74 -2.38 -0.01 0.70 15 26 H 0.04 1.95 7.87 -2.39 -0.02 1.93 15 27 H 0.34 10.98 8.99 -89.69 -0.81 10.17 15 28 H 0.34 10.28 9.08 -89.70 -0.81 9.47 15 29 H 0.17 5.54 8.06 -2.91 -0.02 5.52 15 Total: -1.00 -74.28 245.46 2.58 -71.71 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -0.65 Total: 25.67 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 4.60 Total: -40.97 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -3.18 Total: -109.24 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 1.80 Total: 52.82 kcal Total: -74.28 2.58 -71.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624634.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.677 kcal (2) G-P(sol) polarization free energy of solvation -74.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds