Wall clock time and date at job start Mon Mar 30 2020 01:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47263 * 2 1 4 4 C 1.52997 * 109.47105 * 239.99442 * 2 1 3 5 5 C 1.50707 * 109.46595 * 119.99327 * 2 1 3 6 6 C 1.35659 * 125.38879 * 60.02162 * 5 2 1 7 7 C 1.39762 * 107.34718 * 179.71958 * 6 5 2 8 8 C 1.39548 * 106.45725 * 0.38201 * 7 6 5 9 9 C 1.39748 * 126.20595 * 179.88707 * 8 7 6 10 10 H 1.07999 * 120.00081 * 7.98313 * 9 8 7 11 11 C 1.40161 * 120.00032 * 187.98968 * 9 8 7 12 12 N 1.30805 * 120.00264 * 191.89697 * 11 9 8 13 13 Si 1.86808 * 119.99773 * 11.89871 * 11 9 8 14 14 H 1.48500 * 109.46868 * 269.99831 * 13 11 9 15 15 H 1.48493 * 109.47219 * 30.00001 * 13 11 9 16 16 H 1.48498 * 109.46948 * 150.00218 * 13 11 9 17 17 O 1.34240 * 125.39090 * 239.97366 * 5 2 1 18 18 H 1.08998 * 109.47622 * 300.00573 * 1 2 3 19 19 H 1.09011 * 109.46406 * 60.00762 * 1 2 3 20 20 H 1.08998 * 109.46914 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47333 * 179.97438 * 3 2 1 22 22 H 1.09001 * 109.46611 * 299.99511 * 3 2 1 23 23 H 1.08998 * 109.47269 * 59.99211 * 3 2 1 24 24 H 1.09005 * 109.47089 * 299.99945 * 4 2 1 25 25 H 1.08998 * 109.47090 * 60.00608 * 4 2 1 26 26 H 1.09008 * 109.46504 * 180.02562 * 4 2 1 27 27 H 1.08008 * 126.33059 * 359.97438 * 6 5 2 28 28 H 1.08010 * 126.77063 * 180.23659 * 7 6 5 29 29 H 0.97003 * 119.99513 * 354.72235 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0323 -0.7103 1.2306 6 6 1.7731 -2.0024 1.5528 7 6 2.4251 -2.2698 2.7596 8 6 3.0653 -1.0876 3.1336 9 6 3.8379 -0.8948 4.2820 10 1 4.0909 -1.7361 4.9101 11 6 4.2844 0.3904 4.6187 12 7 5.1908 0.5451 5.5490 13 14 3.5849 1.8825 3.7388 14 1 4.4081 2.1807 2.5393 15 1 2.1874 1.6017 3.3228 16 1 3.6035 3.0511 4.6548 17 8 2.8077 -0.1649 2.1811 18 1 -0.3634 0.5139 0.8899 19 1 -0.3632 0.5138 -0.8902 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1301 1.4425 0.0005 22 1 1.6768 1.9562 -0.8901 23 1 1.6767 1.9564 0.8899 24 1 1.6767 -1.7491 -1.2490 25 1 1.6768 -0.2076 -2.1392 26 1 3.1301 -0.7217 -1.2488 27 1 1.1767 -2.6973 0.9801 28 1 2.4304 -3.2062 3.2980 29 1 5.4982 -0.2208 6.0587 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260627087.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:31 Heat of formation + Delta-G solvation = -45.092537 kcal Electronic energy + Delta-G solvation = -12436.008047 eV Core-core repulsion = 10323.607587 eV Total energy + Delta-G solvation = -2112.400460 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.72008 -37.63132 -35.70336 -33.28604 -30.94309 -28.09213 -28.03935 -26.25458 -22.69006 -21.64292 -20.45822 -19.93625 -17.37300 -16.68200 -15.84917 -15.68362 -14.94694 -14.75979 -14.61455 -13.88328 -13.58164 -13.16130 -12.99058 -12.96312 -12.86221 -12.54157 -12.03822 -11.88808 -11.80099 -11.60078 -11.42487 -11.32801 -10.30023 -9.53984 -9.25031 -6.58298 1.05014 1.31029 1.56012 1.70657 2.06867 2.14351 2.73926 3.03763 3.96064 4.12293 4.15304 4.47604 4.56091 4.79817 4.83351 4.92719 5.01075 5.03408 5.04815 5.16378 5.22901 5.29914 5.34136 5.44292 5.52641 5.58268 5.87649 6.11548 6.41091 6.47915 6.96040 7.87100 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.044573 B = 0.014637 C = 0.012031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.030454 B = 1912.504441 C = 2326.695077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.020 3.980 3 C -0.144 4.144 4 C -0.129 4.129 5 C -0.126 4.126 6 C -0.160 4.160 7 C -0.403 4.403 8 C 0.151 3.849 9 C -0.529 4.529 10 H 0.074 0.926 11 C 0.014 3.986 12 N -0.832 5.832 13 Si 1.102 2.898 14 H -0.263 1.263 15 H -0.260 1.260 16 H -0.267 1.267 17 O -0.209 6.209 18 H 0.041 0.959 19 H 0.089 0.911 20 H 0.058 0.942 21 H 0.041 0.959 22 H 0.092 0.908 23 H 0.041 0.959 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.041 0.959 27 H 0.145 0.855 28 H 0.112 0.888 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.242 2.677 -11.467 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.020 3.980 3 C -0.201 4.201 4 C -0.186 4.186 5 C -0.173 4.173 6 C -0.179 4.179 7 C -0.423 4.423 8 C 0.100 3.900 9 C -0.559 4.559 10 H 0.092 0.908 11 C -0.202 4.202 12 N -0.456 5.456 13 Si 0.923 3.077 14 H -0.188 1.188 15 H -0.185 1.185 16 H -0.193 1.193 17 O -0.110 6.110 18 H 0.060 0.940 19 H 0.108 0.892 20 H 0.077 0.923 21 H 0.060 0.940 22 H 0.111 0.889 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.163 0.837 28 H 0.130 0.870 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.945 4.547 -11.532 14.209 hybrid contribution 0.388 -2.591 1.102 2.842 sum -6.558 1.956 -10.430 12.474 Atomic orbital electron populations 1.21863 0.92112 1.02409 1.02324 1.19073 0.96157 0.94434 0.88348 1.21894 1.00624 0.95103 1.02509 1.21852 1.00519 1.00485 0.95740 1.22585 1.05416 0.94149 0.95129 1.21015 1.03646 0.95849 0.97392 1.21501 1.16980 0.99261 1.04591 1.19839 0.94497 0.87039 0.88630 1.19696 1.32378 0.97308 1.06565 0.90751 1.28291 0.91555 1.04202 0.96102 1.70593 1.20105 1.36752 1.18192 0.83153 0.77976 0.71348 0.75226 1.18760 1.18522 1.19337 1.83899 1.58282 1.39497 1.29372 0.93964 0.89225 0.92256 0.93974 0.88897 0.93934 0.92284 0.89235 0.93942 0.83740 0.87021 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.34 71.98 0.60 -2.84 15 2 C 0.02 0.65 0.92 -52.93 -0.05 0.60 15 3 C -0.14 -4.44 8.01 71.98 0.58 -3.86 15 4 C -0.13 -3.40 8.34 71.98 0.60 -2.80 15 5 C -0.13 -5.57 5.70 25.09 0.14 -5.43 15 6 C -0.16 -7.18 10.07 22.04 0.22 -6.96 15 7 C -0.40 -21.12 10.95 22.95 0.25 -20.87 15 8 C 0.15 8.50 6.44 22.95 0.15 8.65 15 9 C -0.53 -31.21 9.73 23.10 0.22 -30.99 15 10 H 0.07 4.53 8.06 -2.91 -0.02 4.51 15 11 C 0.01 0.77 5.52 85.31 0.47 1.24 15 12 N -0.83 -46.91 13.65 21.87 0.30 -46.61 15 13 Si 1.10 51.63 26.43 68.60 1.81 53.44 15 14 H -0.26 -11.77 7.11 99.48 0.71 -11.06 15 15 H -0.26 -12.17 6.35 99.48 0.63 -11.53 15 16 H -0.27 -11.56 7.11 99.48 0.71 -10.86 15 17 O -0.21 -10.81 5.50 -9.78 -0.05 -10.87 15 18 H 0.04 1.22 8.14 -2.39 -0.02 1.20 15 19 H 0.09 1.73 8.14 -2.38 -0.02 1.71 15 20 H 0.06 1.52 7.98 -2.39 -0.02 1.50 15 21 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 22 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 24 H 0.06 1.51 7.98 -2.38 -0.02 1.49 15 25 H 0.09 1.73 8.14 -2.39 -0.02 1.71 15 26 H 0.04 1.22 8.14 -2.38 -0.02 1.20 15 27 H 0.14 5.43 8.06 -2.91 -0.02 5.40 15 28 H 0.11 5.69 8.06 -2.91 -0.02 5.67 15 29 H 0.28 15.57 8.73 -92.71 -0.81 14.76 15 Total: -1.00 -63.00 246.02 6.24 -56.76 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.99 Total: 10.53 kcal Atomic # 6 Polarization: -66.45 SS G_CDS: 3.19 Total: -63.26 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.30 Total: -46.61 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.05 Total: -10.87 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 1.81 Total: 53.44 kcal Total: -63.00 6.24 -56.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627087.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.669 kcal (2) G-P(sol) polarization free energy of solvation -63.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds