Wall clock time and date at job start Mon Mar 30 2020 02:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48505 * 109.47469 * 269.99869 * 3 2 1 5 5 H 1.48503 * 109.47248 * 30.00038 * 3 2 1 6 6 H 1.48498 * 109.47376 * 149.99538 * 3 2 1 7 7 C 1.37873 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99569 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00370 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47289 * 185.12131 * 9 7 2 11 11 H 1.09001 * 109.47224 * 305.56771 * 10 9 7 12 12 C 1.52996 * 109.47151 * 65.56866 * 10 9 7 13 13 C 1.52998 * 117.49932 * 185.76393 * 12 10 9 14 14 C 1.52998 * 60.02991 * 252.49199 * 13 12 10 15 15 C 1.52994 * 109.46997 * 185.56673 * 10 9 7 16 16 C 1.53784 * 113.61414 * 159.13525 * 15 10 9 17 17 C 1.53957 * 87.02152 * 220.04660 * 16 15 10 18 18 C 1.53780 * 87.10909 * 25.36232 * 17 16 15 19 19 H 0.97003 * 119.99952 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.46522 * 65.11777 * 9 7 2 21 21 H 1.09002 * 109.47194 * 305.12521 * 9 7 2 22 22 H 1.09001 * 115.56238 * 331.44432 * 12 10 9 23 23 H 1.08997 * 117.49920 * 359.97438 * 13 12 10 24 24 H 1.09001 * 117.50186 * 144.99713 * 13 12 10 25 25 H 1.09009 * 117.49875 * 107.49831 * 14 13 12 26 26 H 1.09000 * 117.50408 * 252.51391 * 14 13 12 27 27 H 1.08993 * 112.85373 * 290.33088 * 15 10 9 28 28 H 1.08998 * 113.61527 * 334.56837 * 16 15 10 29 29 H 1.09001 * 113.61561 * 105.46975 * 16 15 10 30 30 H 1.09002 * 113.53565 * 270.81390 * 17 16 15 31 31 H 1.08996 * 113.66375 * 139.93341 * 17 16 15 32 32 H 1.08999 * 113.61440 * 220.08589 * 18 17 16 33 33 H 1.09002 * 113.69144 * 89.19558 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6307 -0.1271 11 1 3.5788 -3.2449 0.6571 12 6 3.6296 -3.1908 -1.4959 13 6 3.9314 -4.6658 -1.7684 14 6 4.7606 -3.5770 -2.4523 15 6 5.5451 -2.6454 0.0126 16 6 6.1144 -4.0189 0.4054 17 6 7.0880 -3.2622 1.3273 18 6 6.0438 -2.1343 1.3746 19 1 -0.4850 0.8401 -0.0004 20 1 3.8744 -0.7614 0.9335 21 1 3.8752 -0.6029 -0.8394 22 1 2.7220 -2.7739 -1.9323 23 1 4.4095 -5.2370 -0.9728 24 1 3.2222 -5.2193 -2.3838 25 1 5.7842 -3.4319 -2.1063 26 1 4.5968 -3.4138 -3.5175 27 1 6.0525 -2.1893 -0.8373 28 1 5.4049 -4.6484 0.9423 29 1 6.6056 -4.5393 -0.4168 30 1 8.0182 -2.9757 0.8366 31 1 7.2481 -3.7496 2.2889 32 1 6.4779 -1.1353 1.3338 33 1 5.3142 -2.2462 2.1767 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260628417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:41 Heat of formation + Delta-G solvation = 25.528259 kcal Electronic energy + Delta-G solvation = -12526.570042 eV Core-core repulsion = 10553.065025 eV Total energy + Delta-G solvation = -1973.505018 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.36491 -36.05716 -33.14540 -30.93954 -26.57016 -25.24590 -23.45534 -21.98913 -21.32855 -19.18321 -18.38307 -16.67860 -15.73344 -14.77301 -14.33026 -13.83186 -13.73554 -12.65643 -12.23111 -12.05728 -11.92991 -11.64446 -11.29431 -11.04906 -10.88068 -10.49896 -10.33012 -10.10942 -9.95263 -9.70227 -9.45154 -9.30993 -8.98312 -8.84422 -8.47100 -5.98495 -3.94748 3.34324 3.41780 3.46380 4.45037 4.50611 4.97635 5.04113 5.11322 5.24019 5.36512 5.45080 5.60074 5.64168 5.86841 5.94056 6.08132 6.10788 6.13129 6.18922 6.28577 6.30964 6.43978 6.60878 6.65133 6.69806 6.89422 7.00798 7.19032 7.39868 7.54319 7.87209 8.61841 9.08231 9.65198 11.15064 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.035884 B = 0.011909 C = 0.009927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.101223 B = 2350.532995 C = 2819.921655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.072 0.928 9 C -0.005 4.005 10 C -0.034 4.034 11 H 0.065 0.935 12 C -0.117 4.117 13 C -0.194 4.194 14 C -0.197 4.197 15 C -0.105 4.105 16 C -0.137 4.137 17 C -0.146 4.146 18 C -0.135 4.135 19 H 0.261 0.739 20 H 0.016 0.984 21 H 0.011 0.989 22 H 0.114 0.886 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.079 -5.951 -0.576 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.091 0.909 9 C -0.042 4.042 10 C -0.052 4.052 11 H 0.084 0.916 12 C -0.135 4.135 13 C -0.231 4.231 14 C -0.233 4.233 15 C -0.123 4.123 16 C -0.175 4.175 17 C -0.183 4.183 18 C -0.172 4.172 19 H 0.071 0.929 20 H 0.034 0.966 21 H 0.030 0.970 22 H 0.132 0.868 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.925 -5.832 -0.572 13.287 hybrid contribution 0.302 0.931 -0.105 0.984 sum 12.228 -4.901 -0.677 13.191 Atomic orbital electron populations 1.69921 1.06276 1.26683 1.51696 1.25025 0.94670 0.99043 0.94843 0.86815 0.80401 0.83876 0.78408 1.20440 1.21604 1.19050 1.21176 0.89597 0.94287 1.49980 0.90943 1.19554 0.96843 0.91689 0.96111 1.20606 0.91450 0.98897 0.94275 0.91644 1.22479 0.99241 0.94940 0.96848 1.22935 1.03799 0.92820 1.03512 1.23085 0.97271 1.05123 0.97864 1.22709 0.97147 0.95625 0.96859 1.23061 0.98488 0.96933 0.98982 1.22875 0.97380 0.98477 0.99591 1.22894 0.98038 0.97646 0.98616 0.92909 0.96586 0.97030 0.86786 0.89350 0.89987 0.88835 0.90081 0.89685 0.90349 0.92180 0.90917 0.92160 0.92127 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.13 13.96 55.43 0.77 -27.36 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 22.02 27.37 -169.99 -4.65 17.37 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.43 6.69 56.52 0.38 -6.05 16 7 C -0.51 -14.48 8.67 -34.44 -0.30 -14.78 16 8 H 0.07 2.21 7.96 -52.49 -0.42 1.79 16 9 C 0.00 -0.11 3.41 -27.88 -0.10 -0.21 16 10 C -0.03 -0.67 1.86 -90.63 -0.17 -0.84 16 11 H 0.07 1.35 7.98 -51.93 -0.41 0.94 16 12 C -0.12 -2.21 5.50 -90.59 -0.50 -2.71 16 13 C -0.19 -3.06 9.82 -26.73 -0.26 -3.32 16 14 C -0.20 -3.09 9.42 -26.70 -0.25 -3.34 16 15 C -0.11 -1.70 2.09 -89.81 -0.19 -1.89 16 16 C -0.14 -1.88 5.40 -25.82 -0.14 -2.02 16 17 C -0.15 -1.87 8.09 -25.83 -0.21 -2.08 16 18 C -0.13 -2.07 6.65 -25.92 -0.17 -2.24 16 19 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 20 H 0.02 0.38 6.73 -51.93 -0.35 0.03 16 21 H 0.01 0.27 7.29 -51.93 -0.38 -0.10 16 22 H 0.11 2.49 7.37 -51.93 -0.38 2.10 16 23 H 0.09 1.30 6.53 -51.93 -0.34 0.96 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.09 1.37 5.10 -51.92 -0.26 1.11 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.08 1.37 6.71 -51.93 -0.35 1.02 16 28 H 0.08 1.09 7.76 -51.93 -0.40 0.69 16 29 H 0.06 0.76 7.65 -51.93 -0.40 0.37 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 LS Contribution 256.78 15.07 3.87 3.87 Total: -1.00 -29.45 256.78 -7.78 -37.23 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.39 Total: 0.52 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: -2.38 Total: -31.63 kcal Atomic # 7 Polarization: -28.13 SS G_CDS: 0.77 Total: -27.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.65 Total: 17.37 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.45 -7.78 -37.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260628417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.759 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds