Wall clock time and date at job start Mon Mar 30 2020 02:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48505 * 109.47469 * 269.99869 * 3 2 1 5 5 H 1.48503 * 109.47248 * 30.00038 * 3 2 1 6 6 H 1.48498 * 109.47376 * 149.99538 * 3 2 1 7 7 C 1.37873 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99569 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00370 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47289 * 185.12131 * 9 7 2 11 11 H 1.09001 * 109.47224 * 305.56771 * 10 9 7 12 12 C 1.52996 * 109.47151 * 65.56866 * 10 9 7 13 13 C 1.52998 * 117.49932 * 185.76393 * 12 10 9 14 14 C 1.52998 * 60.02991 * 252.49199 * 13 12 10 15 15 C 1.52994 * 109.46997 * 185.56673 * 10 9 7 16 16 C 1.53784 * 113.61414 * 159.13525 * 15 10 9 17 17 C 1.53957 * 87.02152 * 220.04660 * 16 15 10 18 18 C 1.53780 * 87.10909 * 25.36232 * 17 16 15 19 19 H 0.97003 * 119.99952 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.46522 * 65.11777 * 9 7 2 21 21 H 1.09002 * 109.47194 * 305.12521 * 9 7 2 22 22 H 1.09001 * 115.56238 * 331.44432 * 12 10 9 23 23 H 1.08997 * 117.49920 * 359.97438 * 13 12 10 24 24 H 1.09001 * 117.50186 * 144.99713 * 13 12 10 25 25 H 1.09009 * 117.49875 * 107.49831 * 14 13 12 26 26 H 1.09000 * 117.50408 * 252.51391 * 14 13 12 27 27 H 1.08993 * 112.85373 * 290.33088 * 15 10 9 28 28 H 1.08998 * 113.61527 * 334.56837 * 16 15 10 29 29 H 1.09001 * 113.61561 * 105.46975 * 16 15 10 30 30 H 1.09002 * 113.53565 * 270.81390 * 17 16 15 31 31 H 1.08996 * 113.66375 * 139.93341 * 17 16 15 32 32 H 1.08999 * 113.61440 * 220.08589 * 18 17 16 33 33 H 1.09002 * 113.69144 * 89.19558 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6307 -0.1271 11 1 3.5788 -3.2449 0.6571 12 6 3.6296 -3.1908 -1.4959 13 6 3.9314 -4.6658 -1.7684 14 6 4.7606 -3.5770 -2.4523 15 6 5.5451 -2.6454 0.0126 16 6 6.1144 -4.0189 0.4054 17 6 7.0880 -3.2622 1.3273 18 6 6.0438 -2.1343 1.3746 19 1 -0.4850 0.8401 -0.0004 20 1 3.8744 -0.7614 0.9335 21 1 3.8752 -0.6029 -0.8394 22 1 2.7220 -2.7739 -1.9323 23 1 4.4095 -5.2370 -0.9728 24 1 3.2222 -5.2193 -2.3838 25 1 5.7842 -3.4319 -2.1063 26 1 4.5968 -3.4138 -3.5175 27 1 6.0525 -2.1893 -0.8373 28 1 5.4049 -4.6484 0.9423 29 1 6.6056 -4.5393 -0.4168 30 1 8.0182 -2.9757 0.8366 31 1 7.2481 -3.7496 2.2889 32 1 6.4779 -1.1353 1.3338 33 1 5.3142 -2.2462 2.1767 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260628417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:41 Heat of formation + Delta-G solvation = 9.494960 kcal Electronic energy + Delta-G solvation = -12527.265298 eV Core-core repulsion = 10553.065025 eV Total energy + Delta-G solvation = -1974.200274 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.66486 -37.33937 -35.21751 -32.84519 -28.32767 -26.41235 -24.86597 -23.36694 -23.09050 -20.46044 -19.80669 -18.85502 -16.96044 -16.41941 -16.06576 -15.23055 -15.11987 -14.68749 -13.80488 -13.63609 -13.26226 -13.01231 -12.87683 -12.71815 -12.16506 -12.01584 -11.92293 -11.81956 -11.47535 -11.23705 -11.05321 -10.84130 -10.68810 -10.50771 -10.38711 -8.26336 -6.27582 1.34270 1.35850 1.48396 2.37246 3.09172 3.09591 3.79756 3.87349 3.94817 4.07312 4.14852 4.23336 4.33037 4.64132 4.71236 4.84177 4.89479 4.92388 4.99221 5.05069 5.05840 5.16224 5.19346 5.28484 5.38524 5.45944 5.54553 5.58658 5.62872 5.74703 5.85310 6.35245 6.79918 7.35693 8.90746 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.035884 B = 0.011909 C = 0.009927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.101223 B = 2350.532995 C = 2819.921655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.515 4.515 8 H 0.030 0.970 9 C 0.001 3.999 10 C -0.027 4.027 11 H 0.044 0.956 12 C -0.156 4.156 13 C -0.177 4.177 14 C -0.172 4.172 15 C -0.108 4.108 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.145 4.145 19 H 0.264 0.736 20 H 0.016 0.984 21 H 0.012 0.988 22 H 0.071 0.929 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.215 -6.146 -0.882 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.195 4.195 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.553 4.553 8 H 0.048 0.952 9 C -0.037 4.037 10 C -0.045 4.045 11 H 0.063 0.937 12 C -0.175 4.175 13 C -0.214 4.214 14 C -0.209 4.209 15 C -0.126 4.126 16 C -0.167 4.167 17 C -0.166 4.166 18 C -0.183 4.183 19 H 0.072 0.928 20 H 0.034 0.966 21 H 0.030 0.970 22 H 0.089 0.911 23 H 0.122 0.878 24 H 0.107 0.893 25 H 0.131 0.869 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.077 -6.044 -0.877 16.267 hybrid contribution -0.777 0.919 -0.017 1.204 sum 14.300 -5.124 -0.894 15.217 Atomic orbital electron populations 1.70080 1.08238 1.27845 1.53488 1.25992 0.95554 1.03345 0.94628 0.85699 0.79535 0.78638 0.79033 1.19403 1.21147 1.17140 1.21474 0.92170 0.92709 1.48986 0.95158 1.19480 0.93565 0.94827 0.95799 1.20429 0.94221 0.95659 0.94186 0.93722 1.22220 0.99633 0.98063 0.97538 1.23013 1.03504 0.91214 1.03661 1.23177 0.96953 1.03056 0.97674 1.22707 0.94022 0.98195 0.97696 1.23007 0.98437 0.95527 0.99719 1.22819 0.97091 0.96509 1.00217 1.22942 0.98870 0.98935 0.97530 0.92757 0.96586 0.96979 0.91086 0.87778 0.89317 0.86902 0.89123 0.88890 0.90857 0.90220 0.88985 0.90879 0.91986 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 2 C 0.00 0.04 5.47 84.65 0.46 0.50 16 3 Si 0.95 45.75 27.37 68.60 1.88 47.63 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.25 -11.15 6.69 99.48 0.67 -10.49 16 7 C -0.52 -30.40 8.67 25.60 0.22 -30.18 16 8 H 0.03 1.98 7.96 -2.91 -0.02 1.95 16 9 C 0.00 0.03 3.41 29.85 0.10 0.13 16 10 C -0.03 -1.05 1.86 -10.80 -0.02 -1.07 16 11 H 0.04 1.90 7.98 -2.39 -0.02 1.88 16 12 C -0.16 -5.94 5.50 -10.77 -0.06 -6.00 16 13 C -0.18 -5.27 9.82 30.59 0.30 -4.97 16 14 C -0.17 -4.97 9.42 30.62 0.29 -4.68 16 15 C -0.11 -3.26 2.09 -10.27 -0.02 -3.28 16 16 C -0.13 -3.10 5.40 31.18 0.17 -2.94 16 17 C -0.13 -2.80 8.09 31.18 0.25 -2.55 16 18 C -0.15 -4.15 6.65 31.12 0.21 -3.94 16 19 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 20 H 0.02 0.76 6.73 -2.39 -0.02 0.74 16 21 H 0.01 0.57 7.29 -2.39 -0.02 0.55 16 22 H 0.07 3.28 7.37 -2.39 -0.02 3.26 16 23 H 0.10 2.78 6.53 -2.39 -0.02 2.76 16 24 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 25 H 0.11 2.84 5.10 -2.38 -0.01 2.83 16 26 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.09 2.68 6.71 -2.39 -0.02 2.66 16 28 H 0.07 1.85 7.76 -2.39 -0.02 1.83 16 29 H 0.08 1.63 7.65 -2.39 -0.02 1.61 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 2.08 8.10 -2.39 -0.02 2.06 16 Total: -1.00 -65.77 256.78 5.10 -60.67 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.02 Total: 11.87 kcal Atomic # 6 Polarization: -60.87 SS G_CDS: 1.90 Total: -58.97 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.30 Total: -61.20 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.63 kcal Total: -65.77 5.10 -60.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260628417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.165 kcal (2) G-P(sol) polarization free energy of solvation -65.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds