Wall clock time and date at job start Mon Mar 30 2020 02:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47392 * 2 1 4 4 H 1.09004 * 109.47002 * 305.63616 * 3 2 1 5 5 C 1.50705 * 109.47241 * 65.63145 * 3 2 1 6 6 H 1.08004 * 119.99414 * 56.77181 * 5 3 2 7 7 C 1.37870 * 120.00343 * 236.76707 * 5 3 2 8 8 N 1.31513 * 119.99943 * 187.97609 * 7 5 3 9 9 Si 1.86800 * 119.99803 * 7.97989 * 7 5 3 10 10 H 1.48501 * 109.47182 * 274.50355 * 9 7 5 11 11 H 1.48495 * 109.47351 * 34.50882 * 9 7 5 12 12 H 1.48510 * 109.46869 * 154.50515 * 9 7 5 13 13 C 1.50695 * 109.47618 * 185.63714 * 3 2 1 14 14 C 1.35317 * 126.03870 * 299.69085 * 13 3 2 15 15 N 1.34952 * 107.74708 * 179.87087 * 14 13 3 16 16 H 0.96998 * 126.03107 * 180.14929 * 15 14 13 17 17 N 1.40081 * 107.92387 * 0.39113 * 15 14 13 18 18 C 1.30835 * 108.20816 * 359.75359 * 17 15 14 19 19 C 1.50697 * 125.90182 * 180.02562 * 18 17 15 20 20 H 1.09003 * 109.47326 * 61.93583 * 1 2 3 21 21 H 1.09000 * 109.47003 * 181.94265 * 1 2 3 22 22 H 1.08999 * 109.46938 * 301.94182 * 1 2 3 23 23 H 1.08999 * 109.47249 * 239.99647 * 2 1 3 24 24 H 1.09004 * 109.46897 * 119.99649 * 2 1 3 25 25 H 0.97010 * 119.99782 * 180.02562 * 8 7 5 26 26 H 1.08001 * 126.12482 * 0.02562 * 14 13 3 27 27 H 1.08997 * 109.47474 * 269.97758 * 19 18 17 28 28 H 1.08996 * 109.47100 * 29.97996 * 19 18 17 29 29 H 1.09003 * 109.47295 * 149.97909 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 1.6548 2.1115 1.2943 6 1 1.9612 1.6815 2.2364 7 6 0.9114 3.2725 1.2756 8 7 0.7082 3.9412 2.3897 9 14 0.1928 3.8956 -0.3321 10 1 1.2072 4.7145 -1.0433 11 1 -0.1951 2.7410 -1.1814 12 1 -1.0049 4.7269 -0.0497 13 6 3.5405 1.4448 -0.1396 14 6 4.4204 0.8732 0.7149 15 7 5.6623 1.0945 0.2355 16 1 6.4919 0.7972 0.6409 17 7 5.5421 1.8340 -0.9482 18 6 4.2701 2.0433 -1.1720 19 6 3.6911 2.7983 -2.3406 20 1 -0.3634 0.4835 -0.9068 21 1 -0.3633 -1.0271 0.0348 22 1 -0.3633 0.5437 0.8721 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 0.1848 4.7579 2.3766 26 1 4.1730 0.3342 1.6175 27 1 3.5997 3.8533 -2.0823 28 1 4.3479 2.6912 -3.2038 29 1 2.7067 2.3966 -2.5810 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260646442.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:23 Heat of formation + Delta-G solvation = 53.216792 kcal Electronic energy + Delta-G solvation = -12355.096099 eV Core-core repulsion = 10279.251403 eV Total energy + Delta-G solvation = -2075.844696 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.44929 -35.11073 -32.19736 -31.78167 -29.50379 -27.33583 -26.38556 -23.37091 -21.12031 -19.30940 -18.48632 -17.15263 -16.65567 -14.33542 -14.01290 -13.63851 -13.26950 -13.05416 -12.72369 -12.44827 -12.25245 -11.53659 -11.39182 -11.16209 -10.79258 -10.73352 -10.48341 -9.81421 -9.63020 -9.49524 -8.92889 -8.63551 -8.47145 -7.42574 -6.03245 -3.99008 2.62715 3.32219 3.40858 3.41341 3.57053 3.65083 4.47112 5.31143 5.43577 5.59005 5.89498 6.02275 6.10706 6.15547 6.28564 6.36740 6.45910 6.64594 6.75309 6.86686 6.98187 7.20469 7.31785 7.41440 7.53675 7.84407 8.01074 8.40989 8.58585 9.01307 9.61244 11.10327 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.031978 B = 0.015284 C = 0.014120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.385897 B = 1831.513488 C = 1982.509495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C 0.074 3.926 4 H 0.042 0.958 5 C -0.493 4.493 6 H 0.071 0.929 7 C 0.071 3.929 8 N -0.903 5.903 9 Si 0.868 3.132 10 H -0.275 1.275 11 H -0.260 1.260 12 H -0.292 1.292 13 C -0.177 4.177 14 C 0.047 3.953 15 N -0.492 5.492 16 H 0.429 0.571 17 N -0.316 5.316 18 C 0.065 3.935 19 C -0.071 4.071 20 H 0.040 0.960 21 H 0.031 0.969 22 H 0.069 0.931 23 H 0.030 0.970 24 H 0.048 0.952 25 H 0.262 0.738 26 H 0.167 0.833 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 -5.446 -5.928 8.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C 0.054 3.946 4 H 0.060 0.940 5 C -0.531 4.531 6 H 0.089 0.911 7 C -0.130 4.130 8 N -0.541 5.541 9 Si 0.696 3.304 10 H -0.200 1.200 11 H -0.185 1.185 12 H -0.219 1.219 13 C -0.188 4.188 14 C -0.098 4.098 15 N -0.201 5.201 16 H 0.271 0.729 17 N -0.142 5.142 18 C -0.101 4.101 19 C -0.130 4.130 20 H 0.059 0.941 21 H 0.050 0.950 22 H 0.088 0.912 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.184 0.816 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.929 -5.087 -6.258 9.452 hybrid contribution -0.740 0.226 -0.001 0.774 sum 4.189 -4.861 -6.259 8.964 Atomic orbital electron populations 1.21715 0.96928 0.99146 1.02249 1.21543 0.95191 0.98444 0.98826 1.17762 0.85687 0.93278 0.97838 0.93966 1.20894 1.32549 1.07922 0.91720 0.91077 1.25050 0.96108 0.96000 0.95822 1.69919 1.40504 1.16699 1.26945 0.87013 0.79148 0.79149 0.85128 1.20044 1.18517 1.21898 1.20696 0.98938 1.04053 0.95129 1.22157 0.84242 1.03301 1.00110 1.46012 1.07391 1.46118 1.20598 0.72886 1.77014 1.19083 1.16413 1.01646 1.22176 0.90740 0.99381 0.97801 1.20127 1.00202 0.99210 0.93439 0.94136 0.94962 0.91177 0.95094 0.93300 0.92826 0.81566 0.90937 0.91676 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.76 37.16 0.36 -2.41 15 2 C -0.10 -2.05 5.23 -26.73 -0.14 -2.19 15 3 C 0.07 1.70 2.07 -92.92 -0.19 1.51 15 4 H 0.04 0.98 3.50 -51.93 -0.18 0.80 15 5 C -0.49 -13.21 7.65 -34.44 -0.26 -13.48 15 6 H 0.07 2.06 8.06 -52.48 -0.42 1.64 15 7 C 0.07 2.00 5.47 -17.82 -0.10 1.91 15 8 N -0.90 -27.20 13.96 55.43 0.77 -26.43 15 9 Si 0.87 21.10 27.00 -169.99 -4.59 16.51 15 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 11 H -0.26 -5.93 6.28 56.52 0.35 -5.58 15 12 H -0.29 -7.17 7.11 56.52 0.40 -6.76 15 13 C -0.18 -3.83 4.83 -105.05 -0.51 -4.33 15 14 C 0.05 0.89 11.50 -17.22 -0.20 0.69 15 15 N -0.49 -8.57 7.36 30.45 0.22 -8.34 15 16 H 0.43 5.64 8.96 -182.61 -1.64 4.00 15 17 N -0.32 -6.31 12.70 33.67 0.43 -5.88 15 18 C 0.07 1.34 7.22 -82.41 -0.59 0.75 15 19 C -0.07 -1.25 10.11 36.00 0.36 -0.89 15 20 H 0.04 0.77 7.69 -51.93 -0.40 0.37 15 21 H 0.03 0.53 8.14 -51.93 -0.42 0.10 15 22 H 0.07 1.50 7.34 -51.93 -0.38 1.12 15 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 26 H 0.17 2.83 8.06 -52.49 -0.42 2.41 15 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 29 H 0.07 1.26 7.23 -51.93 -0.38 0.88 15 LS Contribution 245.20 15.07 3.70 3.70 Total: -1.00 -30.97 245.20 -5.85 -36.82 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.12 Total: 2.07 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -1.27 Total: -18.44 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 1.43 Total: -40.65 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.59 Total: 16.51 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.97 -5.85 -36.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646442.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.039 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds