Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34952 * 126.12495 * 2 1 4 4 H 0.97001 * 126.03745 * 0.02562 * 3 2 1 5 5 N 1.40083 * 107.92568 * 180.02562 * 3 2 1 6 6 C 1.30845 * 108.20255 * 0.02562 * 5 3 2 7 7 C 1.50696 * 125.89360 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.46969 * 90.03126 * 7 6 5 9 9 C 1.50706 * 109.47348 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99302 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00436 * 179.72505 * 9 8 7 12 12 N 1.31514 * 120.00481 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99745 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47209 * 90.00365 * 13 11 9 15 15 H 1.48506 * 109.47294 * 210.00213 * 13 11 9 16 16 H 1.48501 * 109.47275 * 330.00116 * 13 11 9 17 17 C 1.35307 * 126.12933 * 180.30125 * 2 1 3 18 18 C 1.50707 * 126.03876 * 0.02562 * 17 2 1 19 19 H 1.09001 * 109.47141 * 90.01863 * 1 2 3 20 20 H 1.08996 * 109.46507 * 210.02174 * 1 2 3 21 21 H 1.08997 * 109.46648 * 330.01998 * 1 2 3 22 22 H 1.09000 * 109.47664 * 330.03055 * 7 6 5 23 23 H 1.09002 * 109.46824 * 210.02525 * 7 6 5 24 24 H 1.09001 * 109.47671 * 59.99812 * 8 7 6 25 25 H 1.08998 * 109.47454 * 299.99809 * 8 7 6 26 26 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 27 27 H 1.09000 * 109.46999 * 270.14379 * 18 17 2 28 28 H 1.08996 * 109.46982 * 30.14220 * 18 17 2 29 29 H 1.09001 * 109.46775 * 150.14194 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3027 1.0901 0.0000 4 1 2.0055 2.0134 0.0004 5 7 3.6334 0.6525 -0.0006 6 6 3.6335 -0.6559 -0.0015 7 6 4.8544 -1.5393 -0.0029 8 6 5.2680 -1.8399 1.4391 9 6 6.4886 -2.7239 1.4378 10 1 6.9252 -3.0400 0.5019 11 6 7.0508 -3.1249 2.6311 12 7 8.1162 -3.8959 2.6299 13 14 6.2999 -2.5717 4.2497 14 1 5.2794 -3.5588 4.6849 15 1 7.3641 -2.4727 5.2808 16 1 5.6596 -1.2440 4.0702 17 6 2.3049 -1.0928 -0.0057 18 6 1.8434 -2.5275 -0.0138 19 1 -0.3633 -0.0003 -1.0277 20 1 -0.3632 -0.8898 0.5142 21 1 -0.3632 0.8902 0.5135 22 1 5.6703 -1.0308 -0.5165 23 1 4.6267 -2.4728 -0.5177 24 1 4.4521 -2.3485 1.9527 25 1 5.4956 -0.9065 1.9539 26 1 8.5119 -4.1776 3.4695 27 1 1.7293 -2.8782 1.0119 28 1 0.8863 -2.5983 -0.5306 29 1 2.5808 -3.1434 -0.5286 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260695709.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = 47.091680 kcal Electronic energy + Delta-G solvation = -11821.104440 eV Core-core repulsion = 9744.994139 eV Total energy + Delta-G solvation = -2076.110301 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.96892 -34.36214 -32.64082 -32.36342 -30.31063 -28.03238 -25.56934 -25.26156 -21.21981 -19.43580 -18.80482 -17.00589 -16.60565 -14.92593 -14.14879 -14.00837 -13.26577 -12.98064 -12.91370 -12.54650 -12.41354 -12.38936 -12.11457 -11.60405 -11.25062 -10.94735 -10.26669 -10.24574 -9.71544 -9.68749 -9.12897 -8.71414 -8.47342 -7.98407 -5.98673 -3.96162 2.15389 3.16554 3.17678 3.36110 3.43195 3.50269 4.51757 4.81733 5.06345 5.14994 5.36175 5.38584 5.58067 5.70768 5.83537 6.03574 6.06399 6.33218 6.51555 6.53325 6.56655 6.78354 7.15988 7.37805 7.46461 7.61960 7.84894 8.14136 8.58971 9.06189 9.64337 11.14722 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.050748 B = 0.008844 C = 0.008763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.617834 B = 3165.127057 C = 3194.452559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.069 3.931 3 N -0.488 5.488 4 H 0.431 0.569 5 N -0.299 5.299 6 C 0.102 3.898 7 C -0.031 4.031 8 C -0.003 4.003 9 C -0.518 4.518 10 H 0.074 0.926 11 C 0.068 3.932 12 N -0.904 5.904 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.266 1.266 17 C -0.234 4.234 18 C -0.072 4.072 19 H 0.075 0.925 20 H 0.083 0.917 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.014 0.986 25 H 0.017 0.983 26 H 0.262 0.738 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.947 6.633 -4.514 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 N -0.196 5.196 4 H 0.274 0.726 5 N -0.121 5.121 6 C -0.065 4.065 7 C -0.070 4.070 8 C -0.041 4.041 9 C -0.556 4.556 10 H 0.092 0.908 11 C -0.133 4.133 12 N -0.544 5.544 13 Si 0.705 3.295 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.191 1.191 17 C -0.245 4.245 18 C -0.130 4.130 19 H 0.094 0.906 20 H 0.102 0.898 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.032 0.968 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.102 7.588 -4.402 17.465 hybrid contribution -0.946 0.139 0.992 1.378 sum -16.048 7.727 -3.409 18.135 Atomic orbital electron populations 1.20382 0.87824 1.03497 1.02849 1.20784 0.94036 0.87862 1.03233 1.46154 1.04504 1.07593 1.61318 0.72611 1.77357 0.95419 1.13050 1.26303 1.22818 0.96201 0.91312 0.96161 1.20111 0.90451 0.95530 1.00913 1.19495 0.96649 0.96839 0.91148 1.21122 1.10376 1.29490 0.94586 0.90782 1.24974 0.94660 0.94601 0.99041 1.69910 1.21697 1.35900 1.26843 0.86811 0.79029 0.79943 0.83765 1.20252 1.21418 1.19059 1.19838 0.92174 0.95960 1.16519 1.20063 1.00252 0.91012 1.01668 0.90612 0.89793 0.91544 0.91126 0.90558 0.96796 0.96447 0.92783 0.92089 0.92781 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.03 36.01 0.36 -0.43 15 2 C 0.07 0.97 7.21 -82.26 -0.59 0.38 15 3 N -0.49 -7.29 7.36 33.48 0.25 -7.05 15 4 H 0.43 4.75 8.96 -182.61 -1.64 3.11 15 5 N -0.30 -5.85 12.70 33.67 0.43 -5.42 15 6 C 0.10 2.03 6.47 -82.41 -0.53 1.49 15 7 C -0.03 -0.66 5.53 -27.89 -0.15 -0.81 15 8 C 0.00 -0.07 4.02 -27.88 -0.11 -0.19 15 9 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 15 10 H 0.07 2.28 7.99 -52.49 -0.42 1.86 15 11 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 12 N -0.90 -28.31 13.96 55.43 0.77 -27.53 15 13 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 15 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 16 H -0.27 -6.74 6.53 56.52 0.37 -6.37 15 17 C -0.23 -3.93 6.10 -105.05 -0.64 -4.57 15 18 C -0.07 -1.03 9.79 36.01 0.35 -0.67 15 19 H 0.08 0.58 8.14 -51.93 -0.42 0.15 15 20 H 0.08 0.70 7.79 -51.93 -0.40 0.30 15 21 H 0.07 0.48 8.14 -51.93 -0.42 0.06 15 22 H 0.07 1.53 8.14 -51.93 -0.42 1.11 15 23 H 0.08 1.53 7.25 -51.93 -0.38 1.16 15 24 H 0.01 0.34 7.58 -51.93 -0.39 -0.05 15 25 H 0.02 0.46 7.18 -51.93 -0.37 0.08 15 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.05 0.61 7.79 -51.93 -0.40 0.20 15 29 H 0.07 1.00 7.25 -51.93 -0.38 0.63 15 LS Contribution 249.19 15.07 3.76 3.76 Total: -1.00 -33.58 249.19 -6.46 -40.04 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -5.24 Total: -3.32 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.75 Total: -18.28 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 1.45 Total: -40.00 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.58 -6.46 -40.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260695709.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.128 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds