Wall clock time and date at job start Mon Mar 30 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34952 * 126.12495 * 2 1 4 4 H 0.97001 * 126.03745 * 0.02562 * 3 2 1 5 5 N 1.40083 * 107.92568 * 180.02562 * 3 2 1 6 6 C 1.30845 * 108.20255 * 0.02562 * 5 3 2 7 7 C 1.50696 * 125.89360 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.46969 * 90.03126 * 7 6 5 9 9 C 1.50706 * 109.47348 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99302 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00436 * 179.72505 * 9 8 7 12 12 N 1.31514 * 120.00481 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99745 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47209 * 90.00365 * 13 11 9 15 15 H 1.48506 * 109.47294 * 210.00213 * 13 11 9 16 16 H 1.48501 * 109.47275 * 330.00116 * 13 11 9 17 17 C 1.35307 * 126.12933 * 180.30125 * 2 1 3 18 18 C 1.50707 * 126.03876 * 0.02562 * 17 2 1 19 19 H 1.09001 * 109.47141 * 90.01863 * 1 2 3 20 20 H 1.08996 * 109.46507 * 210.02174 * 1 2 3 21 21 H 1.08997 * 109.46648 * 330.01998 * 1 2 3 22 22 H 1.09000 * 109.47664 * 330.03055 * 7 6 5 23 23 H 1.09002 * 109.46824 * 210.02525 * 7 6 5 24 24 H 1.09001 * 109.47671 * 59.99812 * 8 7 6 25 25 H 1.08998 * 109.47454 * 299.99809 * 8 7 6 26 26 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 27 27 H 1.09000 * 109.46999 * 270.14379 * 18 17 2 28 28 H 1.08996 * 109.46982 * 30.14220 * 18 17 2 29 29 H 1.09001 * 109.46775 * 150.14194 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3027 1.0901 0.0000 4 1 2.0055 2.0134 0.0004 5 7 3.6334 0.6525 -0.0006 6 6 3.6335 -0.6559 -0.0015 7 6 4.8544 -1.5393 -0.0029 8 6 5.2680 -1.8399 1.4391 9 6 6.4886 -2.7239 1.4378 10 1 6.9252 -3.0400 0.5019 11 6 7.0508 -3.1249 2.6311 12 7 8.1162 -3.8959 2.6299 13 14 6.2999 -2.5717 4.2497 14 1 5.2794 -3.5588 4.6849 15 1 7.3641 -2.4727 5.2808 16 1 5.6596 -1.2440 4.0702 17 6 2.3049 -1.0928 -0.0057 18 6 1.8434 -2.5275 -0.0138 19 1 -0.3633 -0.0003 -1.0277 20 1 -0.3632 -0.8898 0.5142 21 1 -0.3632 0.8902 0.5135 22 1 5.6703 -1.0308 -0.5165 23 1 4.6267 -2.4728 -0.5177 24 1 4.4521 -2.3485 1.9527 25 1 5.4956 -0.9065 1.9539 26 1 8.5119 -4.1776 3.4695 27 1 1.7293 -2.8782 1.0119 28 1 0.8863 -2.5983 -0.5306 29 1 2.5808 -3.1434 -0.5286 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260695709.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:49 Heat of formation + Delta-G solvation = 23.999998 kcal Electronic energy + Delta-G solvation = -11822.105771 eV Core-core repulsion = 9744.994139 eV Total energy + Delta-G solvation = -2077.111632 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.23104 -36.18821 -34.31603 -33.73179 -32.00358 -29.11538 -27.48366 -26.37800 -23.19636 -20.78692 -20.20701 -18.85546 -18.15314 -16.45859 -15.93186 -15.39459 -14.88247 -14.55684 -14.40299 -13.77855 -13.72600 -13.54352 -13.28800 -12.96938 -12.85284 -12.57631 -12.11740 -11.94899 -11.74612 -11.40204 -11.24136 -10.76097 -10.11638 -9.19022 -8.29323 -6.32925 0.95350 1.33453 1.35915 1.48533 1.79351 2.05711 2.35843 3.05655 3.78306 3.85904 4.23705 4.40239 4.58177 4.61167 4.70231 4.79126 4.95709 5.01695 5.13245 5.13643 5.20657 5.35834 5.40092 5.52508 5.61614 5.83111 6.27667 6.55719 6.73464 6.82103 7.31497 8.87298 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.050748 B = 0.008844 C = 0.008763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.617834 B = 3165.127057 C = 3194.452559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.091 3.909 3 N -0.474 5.474 4 H 0.448 0.552 5 N -0.340 5.340 6 C 0.075 3.925 7 C -0.022 4.022 8 C 0.008 3.992 9 C -0.530 4.530 10 H 0.040 0.960 11 C 0.011 3.989 12 N -0.947 5.947 13 Si 0.946 3.054 14 H -0.260 1.260 15 H -0.280 1.280 16 H -0.262 1.262 17 C -0.263 4.263 18 C -0.070 4.070 19 H 0.098 0.902 20 H 0.096 0.904 21 H 0.089 0.911 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.020 0.980 25 H 0.004 0.996 26 H 0.267 0.733 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.051 7.586 -3.837 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.038 4.038 3 N -0.184 5.184 4 H 0.294 0.706 5 N -0.163 5.163 6 C -0.090 4.090 7 C -0.061 4.061 8 C -0.030 4.030 9 C -0.568 4.568 10 H 0.058 0.942 11 C -0.186 4.186 12 N -0.588 5.588 13 Si 0.770 3.230 14 H -0.184 1.184 15 H -0.206 1.206 16 H -0.186 1.186 17 C -0.274 4.274 18 C -0.128 4.128 19 H 0.117 0.883 20 H 0.114 0.886 21 H 0.108 0.892 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.039 0.961 25 H 0.023 0.977 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.211 8.553 -3.739 20.464 hybrid contribution 0.000 -0.113 0.687 0.696 sum -18.211 8.441 -3.052 20.303 Atomic orbital electron populations 1.20603 0.83585 1.05307 1.04822 1.21526 0.96258 0.86381 0.99654 1.46176 1.03263 1.08982 1.60007 0.70561 1.77228 0.98245 1.13119 1.27746 1.22554 0.96678 0.91556 0.98228 1.19819 0.91444 0.96438 0.98417 1.19317 0.94981 0.95120 0.93596 1.21414 1.11787 1.30057 0.93527 0.94156 1.25885 0.95064 0.94572 1.03110 1.70044 1.23266 1.37278 1.28193 0.85721 0.78628 0.79838 0.78841 1.18422 1.20564 1.18612 1.20175 0.91193 0.97989 1.18042 1.20091 1.01498 0.89378 1.01786 0.88345 0.88579 0.89176 0.92537 0.89926 0.96146 0.97736 0.92362 0.92382 0.89445 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 10.03 71.24 0.71 -0.39 15 2 C 0.09 2.28 7.21 41.40 0.30 2.58 15 3 N -0.47 -13.03 7.36 -48.00 -0.35 -13.39 15 4 H 0.45 8.58 8.96 -213.33 -1.91 6.67 15 5 N -0.34 -13.07 12.70 -47.39 -0.60 -13.68 15 6 C 0.08 2.97 6.47 43.10 0.28 3.25 15 7 C -0.02 -0.96 5.53 29.85 0.17 -0.80 15 8 C 0.01 0.42 4.02 29.85 0.12 0.54 15 9 C -0.53 -31.80 9.66 25.60 0.25 -31.55 15 10 H 0.04 2.61 7.99 -2.91 -0.02 2.59 15 11 C 0.01 0.66 5.47 84.65 0.46 1.12 15 12 N -0.95 -60.50 13.96 21.45 0.30 -60.20 15 13 Si 0.95 46.33 27.47 68.60 1.88 48.21 15 14 H -0.26 -11.95 7.11 99.48 0.71 -11.25 15 15 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 16 H -0.26 -12.56 6.53 99.48 0.65 -11.91 15 17 C -0.26 -8.36 6.10 -20.14 -0.12 -8.49 15 18 C -0.07 -1.84 9.79 71.24 0.70 -1.15 15 19 H 0.10 0.95 8.14 -2.39 -0.02 0.93 15 20 H 0.10 1.11 7.79 -2.39 -0.02 1.09 15 21 H 0.09 0.81 8.14 -2.39 -0.02 0.79 15 22 H 0.06 2.57 8.14 -2.39 -0.02 2.55 15 23 H 0.08 3.44 7.25 -2.39 -0.02 3.42 15 24 H 0.02 1.00 7.58 -2.39 -0.02 0.99 15 25 H 0.00 0.23 7.18 -2.39 -0.02 0.21 15 26 H 0.27 15.86 8.31 -92.71 -0.77 15.09 15 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 28 H 0.09 1.66 7.79 -2.39 -0.02 1.65 15 29 H 0.05 1.58 7.25 -2.39 -0.02 1.56 15 Total: -1.00 -73.85 249.19 3.26 -70.59 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -0.83 Total: 3.35 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 2.86 Total: -34.89 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -0.66 Total: -87.26 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.88 Total: 48.21 kcal Total: -73.85 3.26 -70.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260695709.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.588 kcal (2) G-P(sol) polarization free energy of solvation -73.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds