Wall clock time and date at job start Mon Mar 30 2020 02:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46830 * 2 1 4 4 C 1.50696 * 109.47231 * 119.99957 * 2 1 3 5 5 C 1.39866 * 125.89915 * 275.01691 * 4 2 1 6 6 C 1.35320 * 107.91898 * 179.97438 * 5 4 2 7 7 N 1.34951 * 107.74569 * 359.97438 * 6 5 4 8 8 C 1.46504 * 126.03463 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46990 * 125.02933 * 8 7 6 10 10 H 1.07999 * 120.00083 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99803 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99999 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00165 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47391 * 90.00265 * 13 11 9 15 15 H 1.48508 * 109.47331 * 210.00574 * 13 11 9 16 16 H 1.48507 * 109.47281 * 330.00028 * 13 11 9 17 17 N 1.30844 * 125.89476 * 94.97778 * 4 2 1 18 18 H 1.09000 * 109.46895 * 299.99545 * 1 2 3 19 19 H 1.08990 * 109.47444 * 59.99982 * 1 2 3 20 20 H 1.09009 * 109.46865 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46895 * 240.00455 * 2 1 3 22 22 H 1.09004 * 109.47047 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.47209 * 300.00282 * 3 2 1 24 24 H 1.09005 * 109.47378 * 60.00233 * 3 2 1 25 25 H 1.07993 * 126.04141 * 359.97438 * 5 4 2 26 26 H 1.07996 * 126.12765 * 180.02562 * 6 5 4 27 27 H 1.09001 * 109.46936 * 245.02312 * 8 7 6 28 28 H 1.08995 * 109.47043 * 5.02520 * 8 7 6 29 29 H 0.96997 * 119.99809 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2124 -0.1361 2.4930 6 6 2.6753 -1.0972 3.3254 7 7 2.7839 -2.2394 2.6149 8 6 3.2478 -3.5316 3.1261 9 6 2.2071 -4.5851 2.8469 10 1 1.2915 -4.3188 2.3398 11 6 2.4233 -5.8889 3.2398 12 7 1.5149 -6.8083 2.9966 13 14 4.0066 -6.3495 4.1175 14 1 3.8214 -6.2003 5.5834 15 1 4.3549 -7.7586 3.8034 16 1 5.1024 -5.4559 3.6635 17 7 2.3748 -1.9712 1.3023 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0278 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6767 1.9564 0.8900 25 1 2.0165 0.8927 2.7568 26 1 2.9143 -0.9728 4.3712 27 1 4.1812 -3.8034 2.6332 28 1 3.4122 -3.4592 4.2012 29 1 1.6672 -7.7256 3.2727 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260759813.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:01 Heat of formation + Delta-G solvation = 60.009408 kcal Electronic energy + Delta-G solvation = -11829.880904 eV Core-core repulsion = 9754.330757 eV Total energy + Delta-G solvation = -2075.550146 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.41818 -35.42626 -33.26241 -31.23873 -29.40695 -27.24637 -26.83260 -23.15405 -21.64518 -20.09041 -18.52850 -16.93962 -16.15912 -14.76538 -14.33427 -14.10823 -13.52297 -13.20139 -12.94116 -12.56816 -12.31517 -11.93874 -11.88222 -11.09919 -11.06804 -10.85417 -10.71724 -10.63543 -10.20111 -9.79207 -9.52701 -8.76203 -8.42650 -7.71162 -6.22570 -4.24732 2.77398 3.15154 3.22670 3.23051 3.46402 3.53658 4.23543 4.98808 5.09097 5.18677 5.43774 5.52966 5.72094 5.82250 5.95709 6.04661 6.09258 6.21455 6.27616 6.40890 6.53052 6.54660 6.63101 6.87398 7.26436 7.46598 7.85885 8.35576 8.63273 8.87603 9.32523 10.90247 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.061981 B = 0.008692 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.646277 B = 3220.502230 C = 3486.168983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.010 4.010 3 C -0.138 4.138 4 C 0.048 3.952 5 C -0.288 4.288 6 C 0.041 3.959 7 N -0.329 5.329 8 C 0.230 3.770 9 C -0.534 4.534 10 H 0.085 0.915 11 C 0.076 3.924 12 N -0.888 5.888 13 Si 0.873 3.127 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.264 1.264 17 N -0.274 5.274 18 H 0.055 0.945 19 H 0.055 0.945 20 H 0.058 0.942 21 H 0.078 0.922 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.134 0.866 26 H 0.163 0.837 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 12.998 -1.240 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 C -0.196 4.196 4 C -0.117 4.117 5 C -0.318 4.318 6 C -0.107 4.107 7 N -0.109 5.109 8 C 0.110 3.890 9 C -0.572 4.572 10 H 0.103 0.897 11 C -0.128 4.128 12 N -0.525 5.525 13 Si 0.700 3.300 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.189 1.189 17 N -0.098 5.098 18 H 0.074 0.926 19 H 0.074 0.926 20 H 0.077 0.923 21 H 0.096 0.904 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.151 0.849 26 H 0.180 0.820 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.350 11.507 -1.775 11.878 hybrid contribution 0.684 0.244 1.158 1.367 sum 3.034 11.751 -0.618 12.152 Atomic orbital electron populations 1.21779 0.94350 1.02315 1.01312 1.19363 0.95426 0.94609 0.93655 1.21775 1.01083 0.95196 1.01509 1.22117 1.01727 0.92104 0.95778 1.21067 1.16880 1.00331 0.93520 1.22466 1.02609 0.87160 0.98514 1.48975 1.46683 1.09109 1.06111 1.20004 0.96702 0.78170 0.94088 1.21107 1.04535 0.91605 1.39924 0.89692 1.24835 0.96629 0.95941 0.95356 1.69878 1.34199 1.02282 1.46163 0.86898 0.83948 0.78772 0.80424 1.19748 1.20498 1.18916 1.77369 1.18962 1.14984 0.98449 0.92572 0.92614 0.92314 0.90365 0.92683 0.92634 0.92362 0.84855 0.81981 0.94154 0.93676 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.18 37.16 0.34 -1.59 15 2 C -0.01 -0.15 3.38 -91.77 -0.31 -0.46 15 3 C -0.14 -1.64 8.78 37.16 0.33 -1.31 15 4 C 0.05 0.93 6.13 -82.41 -0.50 0.42 15 5 C -0.29 -5.11 9.98 -40.01 -0.40 -5.51 15 6 C 0.04 0.79 11.45 -17.22 -0.20 0.59 15 7 N -0.33 -7.62 3.67 -62.54 -0.23 -7.85 15 8 C 0.23 5.59 5.33 -5.19 -0.03 5.56 15 9 C -0.53 -15.41 9.79 -34.44 -0.34 -15.74 15 10 H 0.09 2.78 8.06 -52.49 -0.42 2.36 15 11 C 0.08 2.17 5.47 -17.82 -0.10 2.07 15 12 N -0.89 -26.98 13.96 55.43 0.77 -26.20 15 13 Si 0.87 20.44 27.47 -169.99 -4.67 15.77 15 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 16 H -0.26 -5.89 6.54 56.52 0.37 -5.52 15 17 N -0.27 -6.49 12.41 33.67 0.42 -6.07 15 18 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.06 0.93 8.14 -51.92 -0.42 0.50 15 21 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 24 H 0.06 0.65 7.30 -51.93 -0.38 0.27 15 25 H 0.13 1.94 7.43 -52.49 -0.39 1.55 15 26 H 0.16 2.45 8.06 -52.49 -0.42 2.03 15 27 H 0.04 0.98 7.20 -51.93 -0.37 0.61 15 28 H 0.05 1.00 7.50 -51.93 -0.39 0.61 15 29 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 LS Contribution 250.44 15.07 3.77 3.77 Total: -1.00 -31.91 250.44 -5.22 -37.13 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.08 Total: -0.59 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -1.21 Total: -15.97 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.96 Total: -40.12 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.91 -5.22 -37.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260759813.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.144 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds