Wall clock time and date at job start Mon Mar 30 2020 02:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46830 * 2 1 4 4 C 1.50696 * 109.47231 * 119.99957 * 2 1 3 5 5 C 1.39866 * 125.89915 * 275.01691 * 4 2 1 6 6 C 1.35320 * 107.91898 * 179.97438 * 5 4 2 7 7 N 1.34951 * 107.74569 * 359.97438 * 6 5 4 8 8 C 1.46504 * 126.03463 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46990 * 125.02933 * 8 7 6 10 10 H 1.07999 * 120.00083 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99803 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99999 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00165 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47391 * 90.00265 * 13 11 9 15 15 H 1.48508 * 109.47331 * 210.00574 * 13 11 9 16 16 H 1.48507 * 109.47281 * 330.00028 * 13 11 9 17 17 N 1.30844 * 125.89476 * 94.97778 * 4 2 1 18 18 H 1.09000 * 109.46895 * 299.99545 * 1 2 3 19 19 H 1.08990 * 109.47444 * 59.99982 * 1 2 3 20 20 H 1.09009 * 109.46865 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46895 * 240.00455 * 2 1 3 22 22 H 1.09004 * 109.47047 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.47209 * 300.00282 * 3 2 1 24 24 H 1.09005 * 109.47378 * 60.00233 * 3 2 1 25 25 H 1.07993 * 126.04141 * 359.97438 * 5 4 2 26 26 H 1.07996 * 126.12765 * 180.02562 * 6 5 4 27 27 H 1.09001 * 109.46936 * 245.02312 * 8 7 6 28 28 H 1.08995 * 109.47043 * 5.02520 * 8 7 6 29 29 H 0.96997 * 119.99809 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2124 -0.1361 2.4930 6 6 2.6753 -1.0972 3.3254 7 7 2.7839 -2.2394 2.6149 8 6 3.2478 -3.5316 3.1261 9 6 2.2071 -4.5851 2.8469 10 1 1.2915 -4.3188 2.3398 11 6 2.4233 -5.8889 3.2398 12 7 1.5149 -6.8083 2.9966 13 14 4.0066 -6.3495 4.1175 14 1 3.8214 -6.2003 5.5834 15 1 4.3549 -7.7586 3.8034 16 1 5.1024 -5.4559 3.6635 17 7 2.3748 -1.9712 1.3023 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0278 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6767 1.9564 0.8900 25 1 2.0165 0.8927 2.7568 26 1 2.9143 -0.9728 4.3712 27 1 4.1812 -3.8034 2.6332 28 1 3.4122 -3.4592 4.2012 29 1 1.6672 -7.7256 3.2727 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260759813.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:01 Heat of formation + Delta-G solvation = 38.498601 kcal Electronic energy + Delta-G solvation = -11830.813682 eV Core-core repulsion = 9754.330757 eV Total energy + Delta-G solvation = -2076.482925 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.95058 -36.76335 -35.23771 -33.06118 -30.95196 -29.05043 -27.89738 -24.90985 -23.11420 -21.67931 -19.98255 -19.05086 -17.78506 -16.43724 -15.86905 -15.64098 -14.90015 -14.83086 -14.43222 -14.25083 -13.70200 -13.48283 -13.03988 -12.76076 -12.52952 -12.27815 -12.08262 -11.96093 -11.88042 -11.74967 -11.16044 -10.90199 -10.05569 -9.27383 -8.41186 -6.51860 1.23041 1.32555 1.36047 1.46151 1.94329 2.03842 2.25797 2.90918 3.72873 3.98174 4.22542 4.30621 4.36129 4.56703 4.68401 4.84860 4.91332 4.94355 4.95060 5.05558 5.17949 5.25487 5.28819 5.44267 5.57570 5.92775 6.02443 6.44949 6.54772 7.08494 7.12642 8.76315 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.061981 B = 0.008692 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.646277 B = 3220.502230 C = 3486.168983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.016 4.016 3 C -0.129 4.129 4 C 0.050 3.950 5 C -0.283 4.283 6 C 0.039 3.961 7 N -0.361 5.361 8 C 0.238 3.762 9 C -0.549 4.549 10 H 0.022 0.978 11 C 0.013 3.987 12 N -0.942 5.942 13 Si 0.959 3.041 14 H -0.251 1.251 15 H -0.279 1.279 16 H -0.242 1.242 17 N -0.345 5.345 18 H 0.063 0.937 19 H 0.087 0.913 20 H 0.025 0.975 21 H 0.067 0.933 22 H 0.051 0.949 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.173 0.827 26 H 0.203 0.797 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 15.192 0.009 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.036 4.036 3 C -0.186 4.186 4 C -0.115 4.115 5 C -0.312 4.312 6 C -0.108 4.108 7 N -0.141 5.141 8 C 0.118 3.882 9 C -0.587 4.587 10 H 0.040 0.960 11 C -0.185 4.185 12 N -0.581 5.581 13 Si 0.780 3.220 14 H -0.175 1.175 15 H -0.204 1.204 16 H -0.166 1.166 17 N -0.168 5.168 18 H 0.082 0.918 19 H 0.106 0.894 20 H 0.045 0.955 21 H 0.085 0.915 22 H 0.070 0.930 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.190 0.810 26 H 0.220 0.780 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.868 13.742 -0.531 14.286 hybrid contribution 0.070 -0.348 0.677 0.765 sum 3.938 13.394 0.146 13.962 Atomic orbital electron populations 1.21750 0.93383 1.00804 1.03301 1.19612 0.96183 0.96355 0.91459 1.21729 1.00837 0.92625 1.03437 1.22945 0.99529 0.91093 0.97974 1.21542 1.15489 1.01825 0.92360 1.23267 1.01388 0.85891 1.00280 1.48884 1.48895 1.09682 1.06641 1.19778 0.94819 0.77942 0.95694 1.21233 1.03838 0.93838 1.39782 0.95961 1.25968 1.01239 0.95319 0.96009 1.70058 1.37203 1.03014 1.47848 0.85564 0.78357 0.78485 0.79625 1.17492 1.20386 1.16579 1.77304 1.21962 1.17697 0.99819 0.91795 0.89389 0.95550 0.91486 0.93016 0.90030 0.91129 0.81003 0.78029 0.94288 0.90516 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.18 71.98 0.66 -2.91 15 2 C -0.02 -0.46 3.38 -11.54 -0.04 -0.49 15 3 C -0.13 -2.64 8.78 71.98 0.63 -2.01 15 4 C 0.05 1.92 6.13 43.10 0.26 2.19 15 5 C -0.28 -9.37 9.98 21.99 0.22 -9.15 15 6 C 0.04 1.40 11.45 83.54 0.96 2.35 15 7 N -0.36 -16.75 3.67 -351.79 -1.29 -18.04 15 8 C 0.24 11.54 5.33 85.63 0.46 12.00 15 9 C -0.55 -32.96 9.79 25.60 0.25 -32.71 15 10 H 0.02 1.56 8.06 -2.91 -0.02 1.54 15 11 C 0.01 0.78 5.47 84.65 0.46 1.24 15 12 N -0.94 -59.41 13.96 21.45 0.30 -59.11 15 13 Si 0.96 41.83 27.47 68.60 1.88 43.72 15 14 H -0.25 -10.07 7.11 99.48 0.71 -9.37 15 15 H -0.28 -12.02 7.11 99.48 0.71 -11.32 15 16 H -0.24 -9.65 6.54 99.48 0.65 -9.00 15 17 N -0.34 -16.81 12.41 -47.39 -0.59 -17.40 15 18 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 19 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.03 0.84 8.14 -2.38 -0.02 0.82 15 21 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 22 H 0.05 1.10 8.14 -2.38 -0.02 1.08 15 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 15 24 H 0.07 1.29 7.30 -2.38 -0.02 1.27 15 25 H 0.17 4.25 7.43 -2.91 -0.02 4.23 15 26 H 0.20 5.33 8.06 -2.91 -0.02 5.31 15 27 H 0.04 1.88 7.20 -2.39 -0.02 1.86 15 28 H 0.08 3.20 7.50 -2.39 -0.02 3.19 15 29 H 0.27 15.78 8.31 -92.71 -0.77 15.00 15 Total: -1.00 -74.34 250.44 5.23 -69.11 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.06 Total: 11.22 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 3.86 Total: -29.50 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -1.58 Total: -94.55 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.72 kcal Total: -74.34 5.23 -69.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260759813.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.610 kcal (2) G-P(sol) polarization free energy of solvation -74.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds