Wall clock time and date at job start Mon Mar 30 2020 02:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99925 * 2 1 4 4 H 1.48503 * 109.47170 * 270.00504 * 3 2 1 5 5 H 1.48497 * 109.46786 * 30.00254 * 3 2 1 6 6 H 1.48499 * 109.47152 * 150.00025 * 3 2 1 7 7 C 1.37878 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99780 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00073 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.21947 * 60.61190 * 9 7 2 11 11 C 1.51502 * 109.47515 * 302.28044 * 9 7 2 12 12 C 1.53259 * 108.82492 * 177.68181 * 11 9 7 13 13 C 1.52859 * 108.39414 * 62.96362 * 12 11 9 14 14 C 1.51136 * 111.31517 * 300.81145 * 13 12 11 15 15 H 1.09005 * 108.97849 * 174.49476 * 14 13 12 16 16 C 1.53424 * 112.65095 * 294.41353 * 14 13 12 17 17 C 1.54218 * 105.90919 * 148.78100 * 16 14 13 18 18 C 1.54436 * 106.47152 * 359.62665 * 17 16 14 19 19 C 1.53030 * 109.22302 * 180.02562 * 9 7 2 20 20 H 1.08994 * 112.14437 * 48.69288 * 19 9 7 21 21 H 0.97000 * 120.00370 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.83138 * 57.68848 * 11 9 7 23 23 H 1.08993 * 109.19698 * 297.29737 * 11 9 7 24 24 H 1.09002 * 109.68795 * 303.22444 * 12 11 9 25 25 H 1.09002 * 109.68340 * 182.69756 * 12 11 9 26 26 H 1.08994 * 109.10980 * 61.29044 * 13 12 11 27 27 H 1.09005 * 109.10713 * 180.40143 * 13 12 11 28 28 H 1.09008 * 110.16543 * 267.88529 * 16 14 13 29 29 H 1.08996 * 110.16927 * 29.66803 * 16 14 13 30 30 H 1.09006 * 110.05793 * 240.37633 * 17 16 14 31 31 H 1.09001 * 110.10878 * 118.90377 * 17 16 14 32 32 H 1.09004 * 110.55165 * 217.13780 * 18 17 16 33 33 H 1.09004 * 110.55229 * 94.32637 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6339 -2.5571 -0.8971 11 6 0.3384 -2.5554 1.2074 12 6 -0.4624 -3.8614 1.1617 13 6 0.5167 -5.0312 1.2594 14 6 1.5178 -5.0058 0.1275 15 1 2.2536 -5.7940 0.2872 16 6 0.8663 -5.2338 -1.2427 17 6 1.7167 -4.4372 -2.2530 18 6 2.8392 -3.7563 -1.4397 19 6 2.2506 -3.6579 -0.0005 20 1 3.0236 -3.5338 0.7578 21 1 -0.4851 0.8400 0.0004 22 1 -0.3452 -1.7065 1.1943 23 1 0.9422 -2.5281 2.1144 24 1 -1.0137 -3.9214 0.2233 25 1 -1.1588 -3.8945 1.9995 26 1 1.0495 -4.9723 2.2085 27 1 -0.0406 -5.9672 1.2208 28 1 0.8805 -6.2945 -1.4937 29 1 -0.1582 -4.8618 -1.2383 30 1 1.1027 -3.6835 -2.7462 31 1 2.1477 -5.1109 -2.9936 32 1 3.0499 -2.7628 -1.8356 33 1 3.7403 -4.3697 -1.4432 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260943812.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:03 Heat of formation + Delta-G solvation = -37.267563 kcal Electronic energy + Delta-G solvation = -13054.663114 eV Core-core repulsion = 11078.435065 eV Total energy + Delta-G solvation = -1976.228049 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.11562 -33.80356 -32.77733 -30.13066 -27.81887 -26.24412 -24.49814 -21.27189 -20.60294 -19.21979 -17.42951 -16.37699 -14.82665 -14.37661 -14.13508 -13.70168 -13.16622 -12.79382 -12.31038 -11.57749 -11.26223 -11.09071 -10.98019 -10.74941 -10.50390 -10.29097 -10.16901 -10.02612 -9.80006 -9.71861 -9.56655 -9.18302 -8.64996 -8.44576 -8.13521 -5.88111 -3.94611 3.34133 3.41066 3.44321 4.49901 5.30517 5.39363 5.41856 5.43393 5.86387 5.95177 6.03256 6.23342 6.32168 6.35465 6.40867 6.48868 6.52848 6.68088 6.71024 6.77931 6.84807 6.93453 6.98047 7.09929 7.19824 7.28480 7.46894 7.71680 7.85788 8.17928 8.31958 8.60091 9.10286 9.69048 11.15467 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.043419 B = 0.013511 C = 0.011614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.725271 B = 2071.958730 C = 2410.245706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.052 0.948 9 C 0.056 3.944 10 H 0.027 0.973 11 C -0.112 4.112 12 C -0.119 4.119 13 C -0.103 4.103 14 C -0.086 4.086 15 H 0.046 0.954 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.073 4.073 20 H 0.062 0.938 21 H 0.258 0.742 22 H 0.096 0.904 23 H 0.028 0.972 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 -7.772 -0.521 7.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.045 0.955 11 C -0.150 4.150 12 C -0.157 4.157 13 C -0.140 4.140 14 C -0.105 4.105 15 H 0.065 0.935 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.092 4.092 20 H 0.080 0.920 21 H 0.068 0.932 22 H 0.114 0.886 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.123 -7.651 -0.533 7.751 hybrid contribution 0.475 0.895 -0.003 1.013 sum 1.598 -6.756 -0.536 6.963 Atomic orbital electron populations 1.69850 1.05787 1.26016 1.51469 1.24947 0.94787 0.98813 0.95553 0.86700 0.79938 0.84017 0.77957 1.20881 1.21397 1.20063 1.21284 0.92810 0.90848 1.49438 0.92938 1.18375 0.92188 0.90813 0.94813 0.95479 1.21450 0.99221 0.95779 0.98582 1.21658 0.97313 0.96885 0.99804 1.21018 0.97268 0.97831 0.97906 1.21244 0.96797 0.98267 0.94194 0.93508 1.22052 0.99890 0.98159 0.95149 1.22138 0.97645 0.98452 0.97360 1.22566 0.95991 1.00170 0.96694 1.22171 0.97732 0.94354 0.94914 0.91959 0.93237 0.88625 0.95267 0.92890 0.94191 0.93010 0.94014 0.93454 0.91776 0.91920 0.93543 0.90790 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 11.14 55.43 0.62 -24.91 16 2 C 0.06 1.64 5.29 -17.82 -0.09 1.55 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -13.79 7.78 -34.44 -0.27 -14.06 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.06 1.39 1.21 -92.52 -0.11 1.27 16 10 H 0.03 0.73 6.71 -51.93 -0.35 0.38 16 11 C -0.11 -2.70 4.94 -27.35 -0.14 -2.83 16 12 C -0.12 -2.38 5.82 -26.67 -0.16 -2.54 16 13 C -0.10 -1.83 5.37 -27.74 -0.15 -1.97 16 14 C -0.09 -1.58 2.65 -90.84 -0.24 -1.82 16 15 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.11 -1.99 5.84 -25.87 -0.15 -2.14 16 17 C -0.12 -2.10 6.12 -25.34 -0.16 -2.26 16 18 C -0.12 -2.26 6.16 -24.49 -0.15 -2.41 16 19 C -0.07 -1.54 2.87 -88.62 -0.25 -1.79 16 20 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 21 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 22 H 0.10 2.58 5.82 -51.92 -0.30 2.28 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 1.08 6.68 -51.93 -0.35 0.73 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.06 1.16 6.43 -51.93 -0.33 0.83 16 30 H 0.06 1.18 7.81 -51.93 -0.41 0.78 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.56 7.37 -51.93 -0.38 1.18 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 246.18 15.07 3.71 3.71 Total: -1.00 -27.52 246.18 -8.02 -35.54 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -5.46 Total: -1.77 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -1.87 Total: -28.99 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.62 Total: -24.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.52 -8.02 -35.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260943812.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.726 kcal (2) G-P(sol) polarization free energy of solvation -27.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds