Wall clock time and date at job start Mon Mar 30 2020 02:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99925 * 2 1 4 4 H 1.48503 * 109.47170 * 270.00504 * 3 2 1 5 5 H 1.48497 * 109.46786 * 30.00254 * 3 2 1 6 6 H 1.48499 * 109.47152 * 150.00025 * 3 2 1 7 7 C 1.37878 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99780 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00073 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.21947 * 60.61190 * 9 7 2 11 11 C 1.51502 * 109.47515 * 302.28044 * 9 7 2 12 12 C 1.53259 * 108.82492 * 177.68181 * 11 9 7 13 13 C 1.52859 * 108.39414 * 62.96362 * 12 11 9 14 14 C 1.51136 * 111.31517 * 300.81145 * 13 12 11 15 15 H 1.09005 * 108.97849 * 174.49476 * 14 13 12 16 16 C 1.53424 * 112.65095 * 294.41353 * 14 13 12 17 17 C 1.54218 * 105.90919 * 148.78100 * 16 14 13 18 18 C 1.54436 * 106.47152 * 359.62665 * 17 16 14 19 19 C 1.53030 * 109.22302 * 180.02562 * 9 7 2 20 20 H 1.08994 * 112.14437 * 48.69288 * 19 9 7 21 21 H 0.97000 * 120.00370 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.83138 * 57.68848 * 11 9 7 23 23 H 1.08993 * 109.19698 * 297.29737 * 11 9 7 24 24 H 1.09002 * 109.68795 * 303.22444 * 12 11 9 25 25 H 1.09002 * 109.68340 * 182.69756 * 12 11 9 26 26 H 1.08994 * 109.10980 * 61.29044 * 13 12 11 27 27 H 1.09005 * 109.10713 * 180.40143 * 13 12 11 28 28 H 1.09008 * 110.16543 * 267.88529 * 16 14 13 29 29 H 1.08996 * 110.16927 * 29.66803 * 16 14 13 30 30 H 1.09006 * 110.05793 * 240.37633 * 17 16 14 31 31 H 1.09001 * 110.10878 * 118.90377 * 17 16 14 32 32 H 1.09004 * 110.55165 * 217.13780 * 18 17 16 33 33 H 1.09004 * 110.55229 * 94.32637 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6339 -2.5571 -0.8971 11 6 0.3384 -2.5554 1.2074 12 6 -0.4624 -3.8614 1.1617 13 6 0.5167 -5.0312 1.2594 14 6 1.5178 -5.0058 0.1275 15 1 2.2536 -5.7940 0.2872 16 6 0.8663 -5.2338 -1.2427 17 6 1.7167 -4.4372 -2.2530 18 6 2.8392 -3.7563 -1.4397 19 6 2.2506 -3.6579 -0.0005 20 1 3.0236 -3.5338 0.7578 21 1 -0.4851 0.8400 0.0004 22 1 -0.3452 -1.7065 1.1943 23 1 0.9422 -2.5281 2.1144 24 1 -1.0137 -3.9214 0.2233 25 1 -1.1588 -3.8945 1.9995 26 1 1.0495 -4.9723 2.2085 27 1 -0.0406 -5.9672 1.2208 28 1 0.8805 -6.2945 -1.4937 29 1 -0.1582 -4.8618 -1.2383 30 1 1.1027 -3.6835 -2.7462 31 1 2.1477 -5.1109 -2.9936 32 1 3.0499 -2.7628 -1.8356 33 1 3.7403 -4.3697 -1.4432 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260943812.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:03 Heat of formation + Delta-G solvation = -51.026023 kcal Electronic energy + Delta-G solvation = -13055.259725 eV Core-core repulsion = 11078.435065 eV Total energy + Delta-G solvation = -1976.824661 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.70728 -35.61022 -34.54839 -31.97812 -29.38126 -27.90082 -26.40684 -22.94516 -22.31747 -20.78048 -19.06539 -18.37668 -16.71992 -16.03735 -15.71162 -15.31295 -14.80354 -14.48692 -14.14167 -13.29756 -12.91673 -12.84452 -12.78460 -12.46606 -12.29476 -11.87559 -11.85635 -11.70996 -11.58748 -11.22542 -11.22279 -10.88603 -10.50868 -10.29277 -10.15015 -8.00454 -6.14343 1.39349 1.40536 1.50024 2.45262 3.23381 3.85712 3.92137 4.01774 4.39454 4.46234 4.56241 4.75227 4.77218 4.92194 4.93113 4.93968 5.03201 5.07512 5.17786 5.21340 5.25523 5.40601 5.44433 5.50211 5.60867 5.64654 5.69708 5.73287 5.88638 6.18462 6.33723 6.52036 7.00343 7.52334 9.00888 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.043419 B = 0.013511 C = 0.011614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.725271 B = 2071.958730 C = 2410.245706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.523 4.523 8 H 0.046 0.954 9 C 0.061 3.939 10 H -0.003 1.003 11 C -0.111 4.111 12 C -0.113 4.113 13 C -0.099 4.099 14 C -0.085 4.085 15 H 0.073 0.927 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.079 4.079 20 H 0.053 0.947 21 H 0.257 0.743 22 H 0.060 0.940 23 H 0.019 0.981 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -9.568 -0.499 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.561 4.561 8 H 0.064 0.936 9 C 0.042 3.958 10 H 0.015 0.985 11 C -0.149 4.149 12 C -0.150 4.150 13 C -0.137 4.137 14 C -0.103 4.103 15 H 0.091 0.909 16 C -0.149 4.149 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.098 4.098 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.830 -9.452 -0.511 9.641 hybrid contribution 0.262 1.486 -0.016 1.509 sum 2.092 -7.966 -0.527 8.253 Atomic orbital electron populations 1.70002 1.06997 1.26588 1.52216 1.25679 0.95595 1.02019 0.95479 0.85757 0.78856 0.80206 0.78042 1.20408 1.21085 1.19485 1.21666 0.92780 0.92570 1.49090 0.93560 1.18279 0.92498 0.91480 0.93526 0.98482 1.21305 0.98792 0.96980 0.97823 1.21561 0.97646 0.95725 1.00102 1.20999 0.96832 0.97860 0.97987 1.21247 0.97307 0.96793 0.94949 0.90863 1.22049 0.98696 0.99907 0.94287 1.22121 0.96935 0.98417 0.97948 1.22529 0.97679 0.99384 0.95704 1.22107 0.97001 0.94808 0.95842 0.92830 0.93374 0.92193 0.96211 0.93566 0.92713 0.92548 0.90820 0.90100 0.93227 0.94355 0.90481 0.93728 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.21 11.14 21.45 0.24 -53.97 16 2 C 0.01 0.56 5.29 84.66 0.45 1.01 16 3 Si 0.94 44.77 29.54 68.60 2.03 46.80 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.52 -29.31 7.78 25.60 0.20 -29.11 16 8 H 0.05 2.58 7.74 -2.91 -0.02 2.55 16 9 C 0.06 3.04 1.21 -12.02 -0.01 3.03 16 10 H 0.00 -0.16 6.71 -2.39 -0.02 -0.18 16 11 C -0.11 -5.43 4.94 30.19 0.15 -5.28 16 12 C -0.11 -4.41 5.82 30.63 0.18 -4.23 16 13 C -0.10 -3.23 5.37 29.94 0.16 -3.07 16 14 C -0.08 -2.82 2.65 -10.94 -0.03 -2.85 16 15 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 16 C -0.11 -3.53 5.84 31.15 0.18 -3.35 16 17 C -0.12 -3.93 6.12 31.49 0.19 -3.74 16 18 C -0.12 -4.34 6.16 32.05 0.20 -4.14 16 19 C -0.08 -3.26 2.87 -9.50 -0.03 -3.29 16 20 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 21 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 22 H 0.06 3.36 5.82 -2.38 -0.01 3.34 16 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 1.85 6.68 -2.39 -0.02 1.84 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.05 1.70 6.43 -2.39 -0.02 1.69 16 30 H 0.04 1.45 7.81 -2.38 -0.02 1.43 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.04 1.90 7.37 -2.38 -0.02 1.89 16 33 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -60.13 246.18 4.96 -55.17 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.06 Total: 7.03 kcal Atomic # 6 Polarization: -56.67 SS G_CDS: 1.64 Total: -55.03 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.24 Total: -53.97 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -60.13 4.96 -55.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260943812.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.147 kcal (2) G-P(sol) polarization free energy of solvation -60.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds