Wall clock time and date at job start Mon Mar 30 2020 02:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 H 1.09000 * 115.55267 * 29.33495 * 10 9 7 12 12 C 1.53000 * 117.49866 * 243.61901 * 10 9 7 13 13 C 1.52999 * 60.00296 * 252.51574 * 12 10 9 14 14 H 1.08997 * 117.51640 * 107.48257 * 13 12 10 15 15 C 1.53007 * 117.49626 * 252.51370 * 13 12 10 16 16 C 1.54264 * 110.02791 * 246.52841 * 15 13 12 17 17 C 1.54967 * 104.15872 * 217.13711 * 16 15 13 18 18 C 1.54887 * 102.77589 * 37.88726 * 17 16 15 19 19 C 1.53868 * 110.03131 * 129.31201 * 15 13 12 20 20 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 21 21 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 22 22 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 23 23 H 1.09000 * 117.49895 * 0.02562 * 12 10 9 24 24 H 1.09001 * 117.49920 * 145.02475 * 12 10 9 25 25 H 1.08995 * 110.01601 * 7.91490 * 15 13 12 26 26 H 1.09007 * 110.48890 * 335.78344 * 16 15 13 27 27 H 1.09001 * 110.48977 * 98.42848 * 16 15 13 28 28 H 1.08996 * 110.72072 * 279.57493 * 17 16 15 29 29 H 1.09002 * 110.92064 * 156.29849 * 17 16 15 30 30 H 1.09000 * 110.48805 * 203.40221 * 18 17 16 31 31 H 1.09008 * 110.59536 * 80.81798 * 18 17 16 32 32 H 1.08997 * 110.03336 * 238.56893 * 19 15 13 33 33 H 1.09002 * 110.03300 * 0.02562 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 3.2025 -3.4623 0.4823 12 6 2.2461 -4.5909 -1.2153 13 6 1.6767 -5.0776 0.1188 14 1 0.5944 -5.1803 0.1969 15 6 2.4956 -6.1045 0.9038 16 6 1.7429 -7.4499 0.9587 17 6 2.0443 -7.9953 2.3776 18 6 2.0174 -6.7153 3.2493 19 6 2.6704 -5.6376 2.3595 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 0.8902 22 1 0.6248 -2.5571 -0.8897 23 1 1.5386 -4.3732 -2.0153 24 1 3.2039 -5.0022 -1.5338 25 1 3.4704 -6.2408 0.4357 26 1 0.6718 -7.2935 0.8299 27 1 2.1240 -8.1316 0.1982 28 1 3.0279 -8.4638 2.4097 29 1 1.2734 -8.6966 2.6969 30 1 2.5983 -6.8616 4.1599 31 1 0.9914 -6.4388 3.4928 32 1 3.7301 -5.5482 2.5982 33 1 2.1715 -4.6797 2.5069 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260972158.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:51 Heat of formation + Delta-G solvation = -28.443451 kcal Electronic energy + Delta-G solvation = -12032.403243 eV Core-core repulsion = 10056.557836 eV Total energy + Delta-G solvation = -1975.845407 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.94015 -37.26042 -34.87633 -30.84083 -29.47933 -28.92066 -25.30893 -22.79078 -21.77878 -21.01867 -20.17983 -18.45947 -16.72308 -16.59286 -16.20910 -15.09652 -14.80158 -14.30192 -14.13236 -13.88267 -13.28025 -12.90553 -12.60710 -12.48386 -12.37702 -12.06018 -11.88745 -11.84095 -11.57647 -11.46728 -11.39693 -11.19817 -10.77990 -10.45980 -10.19065 -8.20959 -6.32002 1.38506 1.40499 1.51691 2.39871 2.99558 3.14005 3.70229 3.80469 3.90387 4.22508 4.25845 4.27300 4.61303 4.64886 4.72479 4.79263 4.83385 4.91474 4.93079 5.04572 5.09659 5.15725 5.27275 5.30414 5.40910 5.48962 5.52447 5.54227 5.60604 5.67522 5.82452 6.25395 6.83189 7.36741 8.90956 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.059294 B = 0.007271 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.107017 B = 3850.030595 C = 3991.881763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.055 3.945 10 C -0.139 4.139 11 H 0.088 0.912 12 C -0.172 4.172 13 C -0.139 4.139 14 H 0.084 0.916 15 C -0.056 4.056 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.124 4.124 20 H 0.264 0.736 21 H -0.012 1.012 22 H -0.011 1.011 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.415 -13.954 3.300 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.575 4.575 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.157 4.157 11 H 0.106 0.894 12 C -0.209 4.209 13 C -0.158 4.158 14 H 0.103 0.897 15 C -0.074 4.074 16 C -0.153 4.153 17 C -0.155 4.155 18 C -0.161 4.161 19 C -0.162 4.162 20 H 0.073 0.927 21 H 0.007 0.993 22 H 0.007 0.993 23 H 0.096 0.904 24 H 0.124 0.876 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.274 -13.844 3.302 15.178 hybrid contribution -0.089 1.315 -0.158 1.328 sum 5.184 -12.528 3.143 13.918 Atomic orbital electron populations 1.70105 1.07869 1.27799 1.51850 1.26019 0.95797 1.03451 0.94739 0.85416 0.78642 0.78250 0.78562 1.19668 1.20590 1.18717 1.21665 0.93425 0.92153 1.50238 0.92307 1.18544 0.93237 0.92207 0.94178 1.22376 1.00259 0.90685 1.02408 0.89408 1.23129 1.02489 1.03976 0.91276 1.22555 0.98512 0.95412 0.99274 0.89737 1.21347 0.97920 0.93562 0.94607 1.22437 0.99874 0.95058 0.97925 1.22497 1.02278 0.96686 0.94061 1.22365 1.00431 0.95058 0.98294 1.22214 1.00703 0.98683 0.94576 0.92744 0.99326 0.99258 0.90386 0.87608 0.90717 0.92228 0.90553 0.90513 0.90553 0.90720 0.92522 0.91557 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.60 13.29 21.45 0.28 -58.31 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 3 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.54 -31.81 9.08 25.60 0.23 -31.58 16 8 H 0.06 3.35 7.68 -2.91 -0.02 3.33 16 9 C 0.06 3.08 5.26 29.85 0.16 3.23 16 10 C -0.14 -6.09 4.80 -10.79 -0.05 -6.14 16 11 H 0.09 3.84 8.01 -2.39 -0.02 3.82 16 12 C -0.17 -6.26 9.83 30.59 0.30 -5.96 16 13 C -0.14 -4.94 4.71 -10.79 -0.05 -4.99 16 14 H 0.08 3.17 7.81 -2.39 -0.02 3.15 16 15 C -0.06 -1.57 3.10 -10.07 -0.03 -1.60 16 16 C -0.12 -2.63 6.37 31.70 0.20 -2.43 16 17 C -0.12 -2.27 6.91 31.91 0.22 -2.05 16 18 C -0.12 -2.84 6.83 31.67 0.22 -2.62 16 19 C -0.12 -3.51 6.25 31.32 0.20 -3.31 16 20 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 21 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 22 H -0.01 -0.65 7.87 -2.39 -0.02 -0.67 16 23 H 0.08 2.96 8.03 -2.39 -0.02 2.94 16 24 H 0.11 3.27 8.06 -2.39 -0.02 3.25 16 25 H 0.07 1.97 7.93 -2.39 -0.02 1.95 16 26 H 0.06 1.44 7.64 -2.38 -0.02 1.43 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.04 1.50 7.35 -2.39 -0.02 1.49 16 Total: -1.00 -64.83 268.40 5.21 -59.62 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.04 Total: 8.47 kcal Atomic # 6 Polarization: -59.00 SS G_CDS: 1.85 Total: -57.14 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.28 Total: -58.31 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -64.83 5.21 -59.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972158.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.177 kcal (2) G-P(sol) polarization free energy of solvation -64.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds