Wall clock time and date at job start Mon Mar 30 2020 02:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47460 * 299.99832 * 3 2 1 6 6 H 1.48501 * 109.47143 * 59.99993 * 3 2 1 7 7 C 1.37881 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47152 * 180.02562 * 9 7 2 11 11 H 1.09003 * 115.55071 * 329.25995 * 10 9 7 12 12 C 1.52995 * 117.51921 * 114.96607 * 10 9 7 13 13 C 1.52997 * 60.00157 * 107.48220 * 12 10 9 14 14 H 1.08996 * 117.51861 * 107.48729 * 13 12 10 15 15 C 1.53003 * 117.49563 * 252.51283 * 13 12 10 16 16 C 1.54886 * 110.59768 * 139.87935 * 15 13 12 17 17 C 1.54886 * 102.75030 * 156.67558 * 16 15 13 18 18 C 1.54266 * 104.19783 * 322.05559 * 17 16 15 19 19 C 1.53879 * 106.59508 * 23.60947 * 18 17 16 20 20 H 0.97004 * 119.99801 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.46719 * 60.00055 * 9 7 2 22 22 H 1.08997 * 109.47012 * 300.00493 * 9 7 2 23 23 H 1.09002 * 117.49808 * 359.97438 * 12 10 9 24 24 H 1.09008 * 117.49906 * 214.97176 * 12 10 9 25 25 H 1.08995 * 110.43692 * 17.25737 * 15 13 12 26 26 H 1.09003 * 110.75321 * 274.98559 * 16 15 13 27 27 H 1.09001 * 110.76263 * 38.35915 * 16 15 13 28 28 H 1.08998 * 110.48991 * 203.37699 * 17 16 15 29 29 H 1.09001 * 110.48976 * 80.73154 * 17 16 15 30 30 H 1.08998 * 110.02975 * 264.33075 * 18 17 16 31 31 H 1.08989 * 110.07748 * 142.91427 * 18 17 16 32 32 H 1.09001 * 110.02907 * 240.71764 * 19 18 17 33 33 H 1.08997 * 110.07183 * 119.31072 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 3.1931 -3.4702 -0.5032 12 6 2.2691 -4.5716 1.2295 13 6 1.6747 -5.0792 -0.0856 14 1 2.2471 -5.8195 -0.6445 15 6 0.1536 -5.2249 -0.1636 16 6 -0.3685 -4.7574 -1.5448 17 6 -1.7172 -5.5082 -1.6725 18 6 -1.4404 -6.8919 -1.0493 19 6 -0.2509 -6.7118 -0.0899 20 1 -0.4850 0.8401 -0.0004 21 1 0.6239 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 1.5768 -4.3413 2.0393 24 1 3.2330 -4.9780 1.5362 25 1 -0.3244 -4.6595 0.6363 26 1 -0.5247 -3.6786 -1.5537 27 1 0.3165 -5.0562 -2.3382 28 1 -1.9988 -5.6112 -2.7204 29 1 -2.4973 -4.9885 -1.1163 30 1 -1.1853 -7.6087 -1.8299 31 1 -2.3156 -7.2360 -0.4983 32 1 0.5815 -7.3412 -0.4049 33 1 -0.5483 -6.9679 0.9270 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260972159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:54 Heat of formation + Delta-G solvation = -25.553532 kcal Electronic energy + Delta-G solvation = -12271.055851 eV Core-core repulsion = 10295.335761 eV Total energy + Delta-G solvation = -1975.720090 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.99600 -37.18729 -34.85133 -30.61265 -29.43247 -29.19170 -25.33250 -22.78350 -21.75152 -21.02054 -19.88310 -18.58440 -16.70679 -16.62975 -16.02746 -15.45719 -14.52667 -14.34923 -14.06992 -13.70558 -13.49082 -12.87444 -12.74114 -12.44733 -12.37979 -12.01854 -11.86137 -11.79325 -11.57291 -11.38117 -11.28160 -11.13109 -10.77325 -10.40016 -10.12168 -8.18236 -6.27963 1.38578 1.38686 1.52147 2.40921 3.02447 3.15740 3.75032 3.82725 3.91220 4.22261 4.26265 4.33817 4.60034 4.65335 4.73044 4.83752 4.85838 4.92025 4.93774 5.01727 5.13239 5.16501 5.25036 5.34858 5.41281 5.46292 5.57631 5.62766 5.63808 5.78695 5.89380 6.30892 6.88148 7.39830 8.93085 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.049915 B = 0.008866 C = 0.007879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.820953 B = 3157.496937 C = 3552.782932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.539 4.539 8 H 0.055 0.945 9 C 0.059 3.941 10 C -0.149 4.149 11 H 0.087 0.913 12 C -0.174 4.174 13 C -0.134 4.134 14 H 0.116 0.884 15 C -0.058 4.058 16 C -0.120 4.120 17 C -0.125 4.125 18 C -0.117 4.117 19 C -0.111 4.111 20 H 0.262 0.738 21 H 0.010 0.990 22 H -0.016 1.016 23 H 0.075 0.925 24 H 0.105 0.895 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 -12.465 -1.634 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.577 4.577 8 H 0.073 0.927 9 C 0.022 3.978 10 C -0.167 4.167 11 H 0.105 0.895 12 C -0.211 4.211 13 C -0.152 4.152 14 H 0.134 0.866 15 C -0.077 4.077 16 C -0.158 4.158 17 C -0.162 4.162 18 C -0.155 4.155 19 C -0.149 4.149 20 H 0.071 0.929 21 H 0.028 0.972 22 H 0.002 0.998 23 H 0.093 0.907 24 H 0.123 0.877 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.389 -12.368 -1.627 12.480 hybrid contribution 0.233 1.362 0.177 1.394 sum -0.156 -11.005 -1.450 11.101 Atomic orbital electron populations 1.70106 1.07647 1.27510 1.51961 1.25947 0.95785 1.03159 0.94954 0.85433 0.79043 0.78984 0.77799 1.18787 1.20272 1.20396 1.21770 0.93375 0.92582 1.49994 0.92682 1.18584 0.93076 0.91228 0.94877 1.22468 1.00475 0.91543 1.02218 0.89502 1.23056 1.02355 1.04341 0.91375 1.22486 0.95343 0.96955 1.00449 0.86593 1.21442 0.92539 0.96840 0.96881 1.22541 0.97221 0.99002 0.97029 1.22369 0.96434 0.96315 1.01115 1.22116 0.98084 0.96531 0.98731 1.22159 0.98496 0.94376 0.99841 0.92894 0.97190 0.99791 0.90681 0.87651 0.93829 0.94139 0.91283 0.90702 0.92832 0.90434 0.91100 0.90557 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.54 -31.80 9.08 25.60 0.23 -31.57 16 8 H 0.05 3.15 7.69 -2.91 -0.02 3.13 16 9 C 0.06 3.21 4.16 29.85 0.12 3.34 16 10 C -0.15 -6.45 5.65 -10.80 -0.06 -6.51 16 11 H 0.09 3.74 8.03 -2.39 -0.02 3.72 16 12 C -0.17 -6.33 9.84 30.59 0.30 -6.03 16 13 C -0.13 -4.63 5.00 -10.79 -0.05 -4.68 16 14 H 0.12 3.39 7.97 -2.39 -0.02 3.38 16 15 C -0.06 -1.98 2.28 -9.72 -0.02 -2.00 16 16 C -0.12 -4.16 5.77 31.88 0.18 -3.97 16 17 C -0.12 -3.45 6.83 31.67 0.22 -3.23 16 18 C -0.12 -2.65 6.80 31.32 0.21 -2.44 16 19 C -0.11 -2.82 6.37 31.32 0.20 -2.62 16 20 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 21 H 0.01 0.58 5.51 -2.38 -0.01 0.56 16 22 H -0.02 -0.97 7.66 -2.39 -0.02 -0.99 16 23 H 0.07 2.89 8.02 -2.39 -0.02 2.87 16 24 H 0.11 3.23 8.14 -2.38 -0.02 3.21 16 25 H 0.04 1.73 7.65 -2.39 -0.02 1.71 16 26 H 0.04 1.72 6.01 -2.39 -0.01 1.71 16 27 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.71 7.72 -2.39 -0.02 1.69 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -64.39 262.89 5.16 -59.23 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.05 Total: 10.14 kcal Atomic # 6 Polarization: -61.12 SS G_CDS: 1.80 Total: -59.32 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.28 Total: -57.51 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -64.39 5.16 -59.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.680 kcal (2) G-P(sol) polarization free energy of solvation -64.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds