Wall clock time and date at job start Mon Mar 30 2020 02:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 C 1.50702 * 109.47352 * 170.00148 * 4 2 1 6 6 C 1.35968 * 125.95267 * 269.69334 * 5 4 2 7 7 N 1.36164 * 109.04979 * 179.82665 * 6 5 4 8 8 H 0.96999 * 125.74625 * 180.13111 * 7 6 5 9 9 C 1.38027 * 108.51450 * 0.43670 * 7 6 5 10 10 C 1.39948 * 126.35783 * 179.75569 * 9 7 6 11 11 H 1.07997 * 120.00583 * 179.97438 * 10 9 7 12 12 C 1.40071 * 119.99790 * 359.97438 * 10 9 7 13 13 N 1.30865 * 120.00065 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99804 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47066 * 90.00065 * 14 12 10 16 16 H 1.48504 * 109.46999 * 209.99737 * 14 12 10 17 17 H 1.48495 * 109.47057 * 329.99845 * 14 12 10 18 18 C 1.39305 * 125.95529 * 89.99794 * 5 4 2 19 19 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 20 20 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 21 21 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 22 22 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 23 23 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 25 25 H 1.09009 * 109.47180 * 289.99861 * 4 2 1 26 26 H 1.08996 * 109.47374 * 50.00147 * 4 2 1 27 27 H 1.07998 * 125.47368 * 359.97438 * 6 5 4 28 28 H 0.96997 * 119.99569 * 180.02562 * 13 12 10 29 29 H 1.08004 * 126.47085 * 0.02562 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9524 0.9728 6 6 4.0909 -1.9916 0.3419 7 7 5.4399 -1.8126 0.3917 8 1 6.1050 -2.4094 0.0145 9 6 5.7018 -0.6424 1.0752 10 6 6.9652 -0.1052 1.3467 11 1 7.0517 0.8226 1.8927 12 6 8.1178 -0.7710 0.9103 13 7 8.0132 -1.8955 0.2492 14 14 9.8042 -0.0536 1.2721 15 1 10.2957 -0.5758 2.5725 16 1 10.7489 -0.4417 0.1940 17 1 9.7087 1.4269 1.3374 18 6 4.4713 -0.0933 1.4454 19 1 -0.3634 0.5740 -0.8524 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 -1.0253 -0.0709 22 1 1.6459 1.8948 0.8900 23 1 3.0850 1.3425 -0.0005 24 1 1.6459 1.8949 -0.8899 25 1 1.7976 -0.2247 2.0628 26 1 1.5091 -1.7406 1.1755 27 1 3.5859 -2.8238 -0.1257 28 1 8.8113 -2.3566 -0.0526 29 1 4.3166 0.8237 1.9946 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261044223.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:43 Heat of formation + Delta-G solvation = 31.851015 kcal Electronic energy + Delta-G solvation = -11952.169894 eV Core-core repulsion = 9875.398708 eV Total energy + Delta-G solvation = -2076.771186 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.01604 -36.50338 -33.36180 -29.94733 -28.70152 -27.03112 -25.89883 -23.94244 -21.37434 -19.25912 -18.05422 -17.18552 -15.33664 -14.76245 -14.71777 -14.37833 -13.87350 -12.60043 -12.21216 -12.13924 -11.92769 -11.62519 -11.47367 -11.24632 -11.10507 -11.06077 -10.71210 -10.42435 -10.17336 -9.69897 -9.30802 -7.78722 -6.99000 -6.81211 -6.79754 -4.14801 2.98654 3.09832 3.15160 3.93277 3.98229 4.13329 4.93030 5.39588 5.49677 5.59245 5.70353 5.85963 5.98553 6.09060 6.17484 6.32271 6.61606 6.69532 6.77631 7.20710 7.39699 7.61028 7.64542 7.71720 7.97182 8.13741 8.33361 8.83767 9.02223 9.27323 9.81414 10.29141 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.076197 B = 0.008479 C = 0.007966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.378562 B = 3301.414060 C = 3514.247941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.027 3.973 4 C 0.137 3.863 5 C -0.147 4.147 6 C -0.097 4.097 7 N -0.552 5.552 8 H 0.419 0.581 9 C 0.225 3.775 10 C -0.445 4.445 11 H 0.087 0.913 12 C 0.063 3.937 13 N -0.859 5.859 14 Si 0.927 3.073 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.263 1.263 18 C -0.335 4.335 19 H 0.059 0.941 20 H 0.016 0.984 21 H 0.061 0.939 22 H 0.014 0.986 23 H 0.088 0.912 24 H 0.052 0.948 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.125 0.875 28 H 0.283 0.717 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 1.620 -0.211 6.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.121 4.121 4 C 0.009 3.991 5 C -0.155 4.155 6 C -0.226 4.226 7 N -0.158 5.158 8 H 0.265 0.735 9 C 0.110 3.890 10 C -0.481 4.481 11 H 0.106 0.894 12 C -0.147 4.147 13 N -0.493 5.493 14 Si 0.752 3.248 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.187 1.187 18 C -0.358 4.358 19 H 0.078 0.922 20 H 0.035 0.965 21 H 0.080 0.920 22 H 0.032 0.968 23 H 0.107 0.893 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.143 0.857 28 H 0.094 0.906 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.463 1.101 -0.826 5.634 hybrid contribution 0.698 0.365 0.660 1.027 sum -4.766 1.466 -0.166 4.989 Atomic orbital electron populations 1.22359 0.89134 1.01374 0.99519 1.62050 1.05772 1.14168 1.44542 1.22387 1.03075 0.88136 0.98546 1.20294 0.93136 0.96023 0.89608 1.18517 0.91793 0.98058 1.07140 1.21011 0.84394 1.03181 1.14061 1.42825 1.05841 1.21344 1.45773 0.73537 1.18001 0.93295 0.85339 0.92381 1.18789 0.88586 1.08048 1.32693 0.89450 1.25874 1.01775 0.94061 0.93007 1.68833 1.31822 1.15499 1.33165 0.85992 0.80203 0.80083 0.78491 1.19708 1.20506 1.18738 1.20434 0.91328 1.04202 1.19843 0.92186 0.96538 0.91986 0.96782 0.89305 0.92888 0.95752 0.92114 0.85721 0.90625 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.57 60.07 0.57 0.93 15 2 N -0.54 -9.97 5.01 -252.72 -1.27 -11.23 15 3 C 0.03 0.48 9.37 60.06 0.56 1.04 15 4 C 0.14 2.70 5.44 -4.98 -0.03 2.68 15 5 C -0.15 -3.50 4.96 -105.04 -0.52 -4.02 15 6 C -0.10 -2.37 11.83 -16.44 -0.19 -2.56 15 7 N -0.55 -14.60 5.77 -10.36 -0.06 -14.66 15 8 H 0.42 10.97 6.28 -40.82 -0.26 10.72 15 9 C 0.23 6.26 6.71 -83.87 -0.56 5.70 15 10 C -0.45 -12.16 9.33 -38.25 -0.36 -12.52 15 11 H 0.09 2.29 7.85 -52.49 -0.41 1.88 15 12 C 0.06 1.62 5.50 -17.28 -0.09 1.52 15 13 N -0.86 -22.15 10.69 55.56 0.59 -21.56 15 14 Si 0.93 19.30 29.56 -169.99 -5.03 14.28 15 15 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 16 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 17 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 18 C -0.34 -8.70 9.38 -38.62 -0.36 -9.07 15 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 15 21 H 0.06 0.82 8.12 -51.93 -0.42 0.40 15 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 23 H 0.09 1.84 6.09 -51.93 -0.32 1.52 15 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.02 0.47 8.12 -51.92 -0.42 0.05 15 26 H 0.06 1.11 8.06 -51.93 -0.42 0.69 15 27 H 0.13 2.71 8.06 -52.49 -0.42 2.29 15 28 H 0.28 6.68 8.30 -40.82 -0.34 6.34 15 29 H 0.10 2.46 8.06 -52.48 -0.42 2.03 15 LS Contribution 245.95 15.07 3.71 3.71 Total: -1.00 -28.06 245.95 -6.95 -35.01 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -3.92 Total: 10.76 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -0.98 Total: -16.30 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.73 Total: -47.45 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.06 -6.95 -35.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261044223.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.864 kcal (2) G-P(sol) polarization free energy of solvation -28.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds