Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 C 1.50702 * 109.47352 * 170.00148 * 4 2 1 6 6 C 1.35968 * 125.95267 * 269.69334 * 5 4 2 7 7 N 1.36164 * 109.04979 * 179.82665 * 6 5 4 8 8 H 0.96999 * 125.74625 * 180.13111 * 7 6 5 9 9 C 1.38027 * 108.51450 * 0.43670 * 7 6 5 10 10 C 1.39948 * 126.35783 * 179.75569 * 9 7 6 11 11 H 1.07997 * 120.00583 * 179.97438 * 10 9 7 12 12 C 1.40071 * 119.99790 * 359.97438 * 10 9 7 13 13 N 1.30865 * 120.00065 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99804 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47066 * 90.00065 * 14 12 10 16 16 H 1.48504 * 109.46999 * 209.99737 * 14 12 10 17 17 H 1.48495 * 109.47057 * 329.99845 * 14 12 10 18 18 C 1.39305 * 125.95529 * 89.99794 * 5 4 2 19 19 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 20 20 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 21 21 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 22 22 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 23 23 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 25 25 H 1.09009 * 109.47180 * 289.99861 * 4 2 1 26 26 H 1.08996 * 109.47374 * 50.00147 * 4 2 1 27 27 H 1.07998 * 125.47368 * 359.97438 * 6 5 4 28 28 H 0.96997 * 119.99569 * 180.02562 * 13 12 10 29 29 H 1.08004 * 126.47085 * 0.02562 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9524 0.9728 6 6 4.0909 -1.9916 0.3419 7 7 5.4399 -1.8126 0.3917 8 1 6.1050 -2.4094 0.0145 9 6 5.7018 -0.6424 1.0752 10 6 6.9652 -0.1052 1.3467 11 1 7.0517 0.8226 1.8927 12 6 8.1178 -0.7710 0.9103 13 7 8.0132 -1.8955 0.2492 14 14 9.8042 -0.0536 1.2721 15 1 10.2957 -0.5758 2.5725 16 1 10.7489 -0.4417 0.1940 17 1 9.7087 1.4269 1.3374 18 6 4.4713 -0.0933 1.4454 19 1 -0.3634 0.5740 -0.8524 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 -1.0253 -0.0709 22 1 1.6459 1.8948 0.8900 23 1 3.0850 1.3425 -0.0005 24 1 1.6459 1.8949 -0.8899 25 1 1.7976 -0.2247 2.0628 26 1 1.5091 -1.7406 1.1755 27 1 3.5859 -2.8238 -0.1257 28 1 8.8113 -2.3566 -0.0526 29 1 4.3166 0.8237 1.9946 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261044223.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = 13.579629 kcal Electronic energy + Delta-G solvation = -11952.962200 eV Core-core repulsion = 9875.398708 eV Total energy + Delta-G solvation = -2077.563493 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.94085 -37.96251 -35.30902 -31.72776 -30.70003 -28.37213 -27.57442 -25.81499 -22.83471 -21.21924 -20.04575 -19.02924 -17.31815 -16.35793 -16.17861 -15.85835 -15.32401 -14.43487 -14.08103 -13.97157 -13.42487 -13.23732 -13.02699 -12.89749 -12.66790 -12.50299 -12.42857 -12.16496 -11.96795 -11.50657 -11.19229 -9.23336 -8.93850 -8.78101 -8.72252 -6.17741 1.31293 1.40103 1.54358 2.03979 2.23307 2.32592 3.35438 3.44005 3.55337 4.34874 4.38766 4.56222 4.59811 4.77059 4.85282 4.90051 4.96697 5.04861 5.20943 5.24296 5.44027 5.65338 5.95657 6.11540 6.21448 6.31434 6.43511 6.83063 7.07887 7.25575 7.80393 8.37451 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.076197 B = 0.008479 C = 0.007966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.378562 B = 3301.414060 C = 3514.247941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.558 5.558 3 C 0.031 3.969 4 C 0.142 3.858 5 C -0.145 4.145 6 C -0.110 4.110 7 N -0.561 5.561 8 H 0.416 0.584 9 C 0.189 3.811 10 C -0.485 4.485 11 H 0.085 0.915 12 C 0.024 3.976 13 N -0.878 5.878 14 Si 1.002 2.998 15 H -0.264 1.264 16 H -0.269 1.269 17 H -0.261 1.261 18 C -0.352 4.352 19 H 0.076 0.924 20 H 0.026 0.974 21 H 0.074 0.926 22 H 0.023 0.977 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.079 0.921 27 H 0.151 0.849 28 H 0.292 0.708 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 1.689 -0.419 6.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.283 5.283 3 C -0.117 4.117 4 C 0.014 3.986 5 C -0.153 4.153 6 C -0.239 4.239 7 N -0.167 5.167 8 H 0.261 0.739 9 C 0.073 3.927 10 C -0.520 4.520 11 H 0.103 0.897 12 C -0.185 4.185 13 N -0.511 5.511 14 Si 0.823 3.177 15 H -0.189 1.189 16 H -0.193 1.193 17 H -0.185 1.185 18 C -0.375 4.375 19 H 0.095 0.905 20 H 0.045 0.955 21 H 0.093 0.907 22 H 0.041 0.959 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.044 0.956 26 H 0.097 0.903 27 H 0.168 0.832 28 H 0.103 0.897 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.929 1.161 -1.041 6.131 hybrid contribution 0.759 0.324 0.695 1.079 sum -5.170 1.485 -0.346 5.390 Atomic orbital electron populations 1.22437 0.86219 1.02755 1.00797 1.61976 1.08425 1.14119 1.43754 1.22301 1.00823 0.88544 1.00074 1.20244 0.90592 0.97407 0.90342 1.18929 0.93860 0.96867 1.05603 1.21545 0.83838 1.04220 1.14268 1.42881 1.06637 1.21140 1.46086 0.73881 1.18455 0.94288 0.86352 0.93556 1.19053 0.89674 1.08836 1.34455 0.89703 1.26788 1.05427 0.94163 0.92110 1.68868 1.33376 1.16087 1.32804 0.84873 0.74909 0.79228 0.78676 1.18920 1.19316 1.18463 1.20613 0.91854 1.04652 1.20426 0.90481 0.95516 0.90700 0.95862 0.92946 0.90721 0.95631 0.90263 0.83173 0.89665 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.57 127.69 1.22 1.87 15 2 N -0.56 -19.42 5.01 -953.46 -4.78 -24.20 15 3 C 0.03 1.06 9.37 127.69 1.20 2.26 15 4 C 0.14 5.39 5.44 85.56 0.47 5.86 15 5 C -0.14 -6.89 4.96 -20.13 -0.10 -6.99 15 6 C -0.11 -5.37 11.83 83.49 0.99 -4.38 15 7 N -0.56 -30.23 5.77 -186.70 -1.08 -31.30 15 8 H 0.42 22.20 6.28 -92.71 -0.58 21.62 15 9 C 0.19 10.79 6.71 38.94 0.26 11.06 15 10 C -0.48 -27.16 9.33 23.13 0.22 -26.94 15 11 H 0.08 4.59 7.85 -2.91 -0.02 4.57 15 12 C 0.02 1.21 5.50 85.28 0.47 1.67 15 13 N -0.88 -45.38 10.69 21.86 0.23 -45.15 15 14 Si 1.00 39.22 29.56 68.60 2.03 41.24 15 15 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 16 H -0.27 -9.96 7.11 99.48 0.71 -9.25 15 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 18 C -0.35 -18.76 9.38 22.89 0.21 -18.54 15 19 H 0.08 1.70 8.14 -2.39 -0.02 1.69 15 20 H 0.03 0.63 8.14 -2.39 -0.02 0.61 15 21 H 0.07 1.71 8.12 -2.38 -0.02 1.70 15 22 H 0.02 0.74 8.14 -2.38 -0.02 0.72 15 23 H 0.05 2.19 6.09 -2.39 -0.01 2.17 15 24 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 25 H 0.03 0.96 8.12 -2.38 -0.02 0.94 15 26 H 0.08 2.70 8.06 -2.39 -0.02 2.68 15 27 H 0.15 6.35 8.06 -2.91 -0.02 6.33 15 28 H 0.29 13.65 8.30 -92.71 -0.77 12.88 15 29 H 0.10 4.99 8.06 -2.91 -0.02 4.97 15 Total: -1.00 -60.21 245.95 1.89 -58.32 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: 0.55 Total: 35.20 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 4.93 Total: -34.12 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -5.62 Total: -100.65 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.24 kcal Total: -60.21 1.89 -58.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261044223.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.903 kcal (2) G-P(sol) polarization free energy of solvation -60.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds