Wall clock time and date at job start Mon Mar 30 2020 01:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99940 * 2 1 4 4 H 1.48497 * 109.46937 * 269.99843 * 3 2 1 5 5 H 1.48499 * 109.46960 * 29.99835 * 3 2 1 6 6 H 1.48500 * 109.47065 * 149.99521 * 3 2 1 7 7 C 1.37878 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00085 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99650 * 180.02562 * 7 2 1 10 10 H 1.09007 * 109.01373 * 58.91379 * 9 7 2 11 11 C 1.52496 * 109.02457 * 299.99870 * 9 7 2 12 12 C 1.53953 * 112.09377 * 186.18391 * 11 9 7 13 13 C 1.51140 * 106.79814 * 56.74645 * 12 11 9 14 14 H 1.08996 * 109.98397 * 55.04690 * 13 12 11 15 15 N 1.45596 * 119.68222 * 183.81791 * 13 12 11 16 16 C 1.38725 * 104.07928 * 150.08960 * 15 13 12 17 17 N 1.30514 * 112.91547 * 335.58064 * 16 15 13 18 18 C 1.44529 * 107.96702 * 0.09835 * 17 16 15 19 19 H 1.08999 * 108.61956 * 267.51946 * 18 17 16 20 20 C 1.51014 * 120.95554 * 140.15197 * 18 17 16 21 21 H 0.96998 * 120.00364 * 0.02562 * 1 2 3 22 22 H 1.08998 * 108.95378 * 65.51330 * 11 9 7 23 23 H 1.08994 * 108.88515 * 306.80809 * 11 9 7 24 24 H 1.09005 * 109.98506 * 297.42221 * 12 11 9 25 25 H 1.09001 * 109.98106 * 176.07278 * 12 11 9 26 26 H 0.97000 * 127.96205 * 329.83280 * 15 13 12 27 27 H 1.07997 * 123.54408 * 155.56154 * 16 15 13 28 28 H 1.09001 * 110.08566 * 59.51349 * 20 18 17 29 29 H 1.09008 * 110.08126 * 297.90934 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8663 -0.6616 0.8837 11 6 4.0091 -0.4734 -1.2474 12 6 5.5386 -0.5638 -1.3973 13 6 5.8903 -2.0337 -1.4083 14 1 5.3265 -2.5459 -2.1879 15 7 7.2875 -2.4404 -1.4553 16 6 7.3085 -3.6542 -0.7839 17 7 6.3211 -3.7855 0.0595 18 6 5.5203 -2.5839 -0.0010 19 1 5.8782 -1.8885 0.7582 20 6 4.0128 -2.6513 0.0580 21 1 -0.4850 0.8400 -0.0004 22 1 3.7205 0.5761 -1.1892 23 1 3.5403 -0.9212 -2.1236 24 1 6.0253 -0.0705 -0.5559 25 1 5.8492 -0.0994 -2.3332 26 1 8.0317 -1.9725 -1.8654 27 1 8.0624 -4.4110 -0.9425 28 1 3.6952 -3.1201 0.9894 29 1 3.6295 -3.2124 -0.7943 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065983.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:13 Heat of formation + Delta-G solvation = 39.171025 kcal Electronic energy + Delta-G solvation = -12482.572890 eV Core-core repulsion = 10406.119123 eV Total energy + Delta-G solvation = -2076.453766 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.41100 -36.04205 -32.41810 -31.86238 -29.21536 -28.73722 -24.36691 -22.22634 -21.04187 -20.00477 -19.25021 -17.02313 -16.53544 -15.16179 -14.85504 -14.10017 -13.80270 -13.04723 -12.66039 -12.51762 -12.09077 -11.57790 -11.47909 -11.18175 -10.82999 -10.35327 -10.28709 -10.01724 -9.64292 -9.25534 -9.16556 -8.84649 -8.51899 -7.79913 -6.06508 -4.05349 2.65218 3.25154 3.36423 3.38491 3.70512 4.40464 4.67213 5.05268 5.22575 5.30673 5.55246 5.83299 5.88860 6.05883 6.10117 6.11914 6.24738 6.46140 6.51999 6.63651 6.86638 6.92344 6.96207 7.27468 7.54826 7.77268 8.03606 8.20110 8.54435 8.98867 9.55654 11.06976 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.063481 B = 0.011722 C = 0.010474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.967941 B = 2388.013248 C = 2672.632290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.512 4.512 8 H 0.075 0.925 9 C 0.015 3.985 10 H 0.026 0.974 11 C -0.116 4.116 12 C -0.114 4.114 13 C 0.101 3.899 14 H 0.070 0.930 15 N -0.775 5.775 16 C 0.326 3.674 17 N -0.550 5.550 18 C 0.042 3.958 19 H 0.070 0.930 20 C -0.072 4.072 21 H 0.263 0.737 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.410 0.590 27 H 0.182 0.818 28 H 0.064 0.936 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.214 -1.961 -3.851 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.093 0.907 9 C -0.005 4.005 10 H 0.044 0.956 11 C -0.154 4.154 12 C -0.153 4.153 13 C -0.006 4.006 14 H 0.088 0.912 15 N -0.423 5.423 16 C 0.027 3.973 17 N -0.273 5.273 18 C -0.069 4.069 19 H 0.087 0.913 20 C -0.110 4.110 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.249 0.751 27 H 0.198 0.802 28 H 0.082 0.918 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.509 -2.436 -3.121 14.077 hybrid contribution 0.901 1.914 -0.838 2.275 sum 14.410 -0.523 -3.959 14.953 Atomic orbital electron populations 1.69896 1.06261 1.26880 1.50934 1.25036 0.94692 0.98958 0.94578 0.86870 0.79906 0.83756 0.77867 1.20640 1.22489 1.19088 1.21062 0.88682 0.94561 1.50640 0.90654 1.19274 0.96838 0.91319 0.93043 0.95608 1.22043 0.91053 1.00494 1.01845 1.21555 0.99037 0.93677 1.00998 1.22112 0.81918 0.97729 0.98848 0.91198 1.45908 1.09185 1.23290 1.63938 1.25701 0.96733 0.87259 0.87642 1.74414 1.09172 1.24601 1.19128 1.22429 0.97411 0.91790 0.95315 0.91250 1.21151 0.89334 0.98757 1.01805 0.92682 0.93252 0.91789 0.92033 0.92592 0.75114 0.80187 0.91771 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.92 15 2 C 0.07 1.98 5.45 -17.82 -0.10 1.88 15 3 Si 0.89 21.88 24.30 -169.99 -4.13 17.75 15 4 H -0.28 -6.67 6.92 56.52 0.39 -6.28 15 5 H -0.30 -7.39 7.11 56.52 0.40 -6.99 15 6 H -0.27 -6.29 6.50 56.52 0.37 -5.92 15 7 C -0.51 -14.39 9.09 -34.44 -0.31 -14.71 15 8 H 0.08 2.30 7.98 -52.49 -0.42 1.88 15 9 C 0.01 0.35 1.67 -91.39 -0.15 0.19 15 10 H 0.03 0.63 7.09 -51.93 -0.37 0.26 15 11 C -0.12 -2.45 4.52 -26.49 -0.12 -2.57 15 12 C -0.11 -1.94 6.01 -27.17 -0.16 -2.10 15 13 C 0.10 1.64 3.14 -67.99 -0.21 1.43 15 14 H 0.07 1.22 7.93 -51.93 -0.41 0.80 15 15 N -0.78 -9.90 6.72 -55.18 -0.37 -10.27 15 16 C 0.33 4.27 12.57 -86.89 -1.09 3.18 15 17 N -0.55 -9.57 11.73 -55.89 -0.66 -10.23 15 18 C 0.04 0.78 3.13 -68.62 -0.21 0.57 15 19 H 0.07 1.37 7.71 -51.93 -0.40 0.97 15 20 C -0.07 -1.53 5.28 -27.09 -0.14 -1.68 15 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 15 22 H 0.05 1.10 3.32 -51.93 -0.17 0.93 15 23 H 0.06 1.36 8.12 -51.93 -0.42 0.94 15 24 H 0.06 1.04 7.90 -51.93 -0.41 0.63 15 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.41 3.98 8.96 -40.82 -0.37 3.62 15 27 H 0.18 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.06 1.40 8.14 -51.93 -0.42 0.98 15 29 H 0.06 1.26 7.97 -51.92 -0.41 0.84 15 LS Contribution 227.73 15.07 3.43 3.43 Total: -1.00 -31.32 227.73 -7.29 -38.61 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -3.83 Total: 1.42 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -2.51 Total: -13.80 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.25 Total: -47.41 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.13 Total: 17.75 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -31.32 -7.29 -38.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065983.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.781 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds