Wall clock time and date at job start Mon Mar 30 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99752 * 2 1 4 4 H 1.48505 * 109.47069 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47288 * 299.99903 * 3 2 1 6 6 H 1.48506 * 109.47287 * 60.00524 * 3 2 1 7 7 C 1.37870 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00281 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00090 * 0.02562 * 7 2 1 10 10 H 1.09008 * 115.56146 * 34.30432 * 9 7 2 11 11 C 1.53068 * 117.49363 * 248.60195 * 9 7 2 12 12 C 1.52995 * 59.98552 * 252.51023 * 11 9 7 13 13 H 1.08998 * 117.50211 * 107.49917 * 12 11 9 14 14 C 1.52997 * 117.50060 * 252.49965 * 12 11 9 15 15 C 1.53002 * 109.47415 * 128.74520 * 14 12 11 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 C 1.52997 * 109.47232 * 248.74394 * 14 12 11 20 20 H 0.97001 * 120.00027 * 359.97438 * 1 2 3 21 21 H 1.09009 * 117.51893 * 145.03579 * 11 9 7 22 22 H 1.08999 * 117.51792 * 359.97438 * 11 9 7 23 23 H 1.09002 * 109.47497 * 8.74168 * 14 12 11 24 24 H 1.08992 * 109.47063 * 59.99950 * 15 14 12 25 25 H 1.09004 * 109.46733 * 299.99664 * 15 14 12 26 26 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 27 27 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 28 28 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 29 29 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 30 30 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 32 32 H 1.09002 * 109.47153 * 299.99992 * 19 14 12 33 33 H 1.09001 * 109.47289 * 60.00075 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.3126 -2.4999 -0.5563 11 6 1.3263 -3.3596 1.2620 12 6 2.0731 -3.7895 -0.0022 13 1 3.1590 -3.6944 -0.0022 14 6 1.5152 -4.9822 -0.7813 15 6 1.3618 -4.6020 -2.2553 16 6 0.8032 -5.7946 -3.0342 17 6 1.7634 -6.9793 -2.9105 18 6 1.9169 -7.3596 -1.4365 19 6 2.4758 -6.1666 -0.6575 20 1 -0.4850 0.8400 0.0004 21 1 0.4375 -3.9267 1.5388 22 1 1.9210 -2.9820 2.0937 23 1 0.5426 -5.2592 -0.3744 24 1 2.3343 -4.3251 -2.6622 25 1 0.6774 -3.7582 -2.3435 26 1 -0.1694 -6.0711 -2.6272 27 1 0.6944 -5.5238 -4.0844 28 1 1.3658 -7.8289 -3.4657 29 1 2.7360 -6.7028 -3.3175 30 1 2.6012 -8.2034 -1.3482 31 1 0.9442 -7.6361 -1.0294 32 1 3.4483 -5.8897 -1.0644 33 1 2.5851 -6.4376 0.3927 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112635.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:49 Heat of formation + Delta-G solvation = -18.499082 kcal Electronic energy + Delta-G solvation = -12273.780326 eV Core-core repulsion = 10298.366139 eV Total energy + Delta-G solvation = -1975.414187 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.48730 -35.57387 -32.23867 -30.36592 -29.78446 -25.48921 -22.60640 -22.23018 -20.25286 -19.46809 -18.92044 -16.46398 -15.08879 -14.57281 -14.00085 -13.77710 -13.52832 -13.09596 -12.42135 -12.02900 -11.80053 -11.54438 -11.00652 -10.98815 -10.80524 -10.75808 -10.61363 -10.34460 -9.99769 -9.73015 -9.63640 -9.25993 -8.95098 -8.34049 -8.10339 -6.04897 -4.03150 3.28857 3.36783 3.41265 4.41397 4.98819 5.03727 5.13251 5.18077 5.47585 5.58273 5.77209 5.84457 5.89238 5.91834 5.96800 6.07065 6.28728 6.33341 6.37860 6.49661 6.54416 6.64445 6.66887 6.72755 6.86312 7.00462 7.03830 7.11726 7.46574 7.71181 7.93855 8.49828 8.98567 9.56294 11.05866 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.059161 B = 0.008236 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.173974 B = 3398.738217 C = 3539.035380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.493 4.493 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.075 0.925 11 C -0.211 4.211 12 C -0.185 4.185 13 H 0.081 0.919 14 C -0.047 4.047 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.110 4.110 20 H 0.261 0.739 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -10.778 -3.789 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.093 0.907 11 C -0.249 4.249 12 C -0.203 4.203 13 H 0.100 0.900 14 C -0.065 4.065 15 C -0.147 4.147 16 C -0.158 4.158 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.148 4.148 20 H 0.071 0.929 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.217 -10.646 -3.795 11.518 hybrid contribution 0.436 0.869 0.169 0.987 sum 2.653 -9.777 -3.626 10.760 Atomic orbital electron populations 1.69977 1.06066 1.26624 1.49840 1.25030 0.94861 0.99251 0.94604 0.86513 0.80173 0.83542 0.77658 1.19653 1.20867 1.20908 1.20756 0.92600 0.89623 1.50049 0.92439 1.19910 0.96250 0.87870 0.93880 0.90687 1.23082 1.00816 1.07952 0.93062 1.22331 0.97411 0.98546 1.02043 0.90039 1.20609 0.97696 0.93444 0.94749 1.21526 1.01314 0.97057 0.94848 1.21573 0.98632 0.95779 0.99775 1.21523 0.99778 0.97775 0.96418 1.21553 1.00706 0.97769 0.95584 1.21572 0.99003 0.94816 0.99364 0.92928 0.91990 0.90983 0.92337 0.92321 0.91303 0.92456 0.92620 0.92889 0.92297 0.92808 0.92393 0.92415 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.13 55.43 0.73 -25.56 16 2 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.49 -14.00 9.20 -34.44 -0.32 -14.32 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.04 1.02 4.79 -91.74 -0.44 0.58 16 10 H 0.08 2.09 7.37 -51.92 -0.38 1.71 16 11 C -0.21 -4.94 9.88 -26.70 -0.26 -5.20 16 12 C -0.18 -4.01 4.85 -90.62 -0.44 -4.45 16 13 H 0.08 1.80 8.11 -51.93 -0.42 1.37 16 14 C -0.05 -0.84 2.34 -90.62 -0.21 -1.05 16 15 C -0.11 -1.90 5.04 -26.73 -0.13 -2.04 16 16 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 17 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 18 C -0.12 -1.53 5.93 -26.71 -0.16 -1.68 16 19 C -0.11 -1.67 5.19 -26.71 -0.14 -1.81 16 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 21 H 0.06 1.36 8.05 -51.92 -0.42 0.95 16 22 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 23 H 0.06 1.08 7.90 -51.93 -0.41 0.67 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.07 1.34 7.29 -51.93 -0.38 0.96 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 264.78 15.07 3.99 3.99 Total: -1.00 -28.66 264.78 -8.60 -37.26 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.78 Total: -0.49 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: -2.52 Total: -31.69 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.73 Total: -25.56 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.66 -8.60 -37.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112635.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.760 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds