Wall clock time and date at job start Mon Mar 30 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99752 * 2 1 4 4 H 1.48505 * 109.47069 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47288 * 299.99903 * 3 2 1 6 6 H 1.48506 * 109.47287 * 60.00524 * 3 2 1 7 7 C 1.37870 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00281 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00090 * 0.02562 * 7 2 1 10 10 H 1.09008 * 115.56146 * 34.30432 * 9 7 2 11 11 C 1.53068 * 117.49363 * 248.60195 * 9 7 2 12 12 C 1.52995 * 59.98552 * 252.51023 * 11 9 7 13 13 H 1.08998 * 117.50211 * 107.49917 * 12 11 9 14 14 C 1.52997 * 117.50060 * 252.49965 * 12 11 9 15 15 C 1.53002 * 109.47415 * 128.74520 * 14 12 11 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 C 1.52997 * 109.47232 * 248.74394 * 14 12 11 20 20 H 0.97001 * 120.00027 * 359.97438 * 1 2 3 21 21 H 1.09009 * 117.51893 * 145.03579 * 11 9 7 22 22 H 1.08999 * 117.51792 * 359.97438 * 11 9 7 23 23 H 1.09002 * 109.47497 * 8.74168 * 14 12 11 24 24 H 1.08992 * 109.47063 * 59.99950 * 15 14 12 25 25 H 1.09004 * 109.46733 * 299.99664 * 15 14 12 26 26 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 27 27 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 28 28 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 29 29 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 30 30 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 32 32 H 1.09002 * 109.47153 * 299.99992 * 19 14 12 33 33 H 1.09001 * 109.47289 * 60.00075 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.3126 -2.4999 -0.5563 11 6 1.3263 -3.3596 1.2620 12 6 2.0731 -3.7895 -0.0022 13 1 3.1590 -3.6944 -0.0022 14 6 1.5152 -4.9822 -0.7813 15 6 1.3618 -4.6020 -2.2553 16 6 0.8032 -5.7946 -3.0342 17 6 1.7634 -6.9793 -2.9105 18 6 1.9169 -7.3596 -1.4365 19 6 2.4758 -6.1666 -0.6575 20 1 -0.4850 0.8400 0.0004 21 1 0.4375 -3.9267 1.5388 22 1 1.9210 -2.9820 2.0937 23 1 0.5426 -5.2592 -0.3744 24 1 2.3343 -4.3251 -2.6622 25 1 0.6774 -3.7582 -2.3435 26 1 -0.1694 -6.0711 -2.6272 27 1 0.6944 -5.5238 -4.0844 28 1 1.3658 -7.8289 -3.4657 29 1 2.7360 -6.7028 -3.3175 30 1 2.6012 -8.2034 -1.3482 31 1 0.9442 -7.6361 -1.0294 32 1 3.4483 -5.8897 -1.0644 33 1 2.5851 -6.4376 0.3927 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261112635.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:49 Heat of formation + Delta-G solvation = -32.660213 kcal Electronic energy + Delta-G solvation = -12274.394399 eV Core-core repulsion = 10298.366139 eV Total energy + Delta-G solvation = -1976.028259 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.91626 -37.25476 -34.32913 -31.56391 -31.19020 -27.61571 -24.02111 -23.49495 -22.18912 -20.80738 -20.50838 -18.58240 -16.60016 -16.45318 -15.29396 -15.14312 -14.95343 -14.70487 -13.97395 -13.50935 -13.34331 -12.96945 -12.94852 -12.84463 -12.44493 -12.23149 -11.94208 -11.85938 -11.46610 -11.29764 -11.11986 -10.99160 -10.84838 -10.26450 -10.04113 -8.21179 -6.26680 1.38630 1.39177 1.52444 2.38729 2.98608 3.51850 3.81638 3.97322 4.06300 4.31172 4.45083 4.52806 4.57047 4.69812 4.72729 4.77450 4.85671 4.90652 4.95550 5.02572 5.10812 5.22326 5.32788 5.33870 5.39383 5.46494 5.52184 5.57575 5.65951 5.71976 5.81570 6.35750 6.80558 7.35897 8.90567 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.059161 B = 0.008236 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.173974 B = 3398.738217 C = 3539.035380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.003 3.997 10 H 0.046 0.954 11 C -0.207 4.207 12 C -0.153 4.153 13 H 0.080 0.920 14 C -0.045 4.045 15 C -0.108 4.108 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.106 4.106 20 H 0.264 0.736 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 -12.091 -4.217 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.072 0.928 9 C -0.015 4.015 10 H 0.064 0.936 11 C -0.245 4.245 12 C -0.172 4.172 13 H 0.098 0.902 14 C -0.064 4.064 15 C -0.146 4.146 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.144 4.144 20 H 0.073 0.927 21 H 0.092 0.908 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.256 -11.974 -4.223 13.108 hybrid contribution 0.095 1.256 0.310 1.297 sum 3.351 -10.718 -3.913 11.892 Atomic orbital electron populations 1.70098 1.07652 1.27689 1.50927 1.25904 0.95759 1.02985 0.94173 0.85414 0.78966 0.78802 0.77942 1.18879 1.20092 1.20233 1.21076 0.92636 0.91142 1.50327 0.92787 1.19748 0.96285 0.89341 0.96167 0.93627 1.23058 1.01589 1.07123 0.92713 1.22381 0.96853 0.97500 1.00452 0.90180 1.20626 0.98136 0.93154 0.94439 1.21469 1.00456 0.97634 0.95052 1.21541 0.99030 0.95029 0.99732 1.21525 0.99470 0.97593 0.96606 1.21542 1.01298 0.97169 0.95222 1.21530 0.98173 0.94391 1.00260 0.92693 0.90803 0.91413 0.92841 0.92752 0.94629 0.92318 0.91545 0.90471 0.91994 0.90457 0.92108 0.92264 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.24 13.13 21.44 0.28 -55.96 16 2 C 0.01 0.61 5.46 84.65 0.46 1.08 16 3 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.51 -29.94 9.20 25.60 0.24 -29.71 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.00 0.17 4.79 -11.52 -0.06 0.11 16 10 H 0.05 2.70 7.37 -2.38 -0.02 2.68 16 11 C -0.21 -9.78 9.88 30.62 0.30 -9.47 16 12 C -0.15 -6.68 4.85 -10.80 -0.05 -6.73 16 13 H 0.08 3.50 8.11 -2.39 -0.02 3.48 16 14 C -0.05 -1.59 2.34 -10.79 -0.03 -1.62 16 15 C -0.11 -3.74 5.04 30.60 0.15 -3.59 16 16 C -0.12 -3.06 5.92 30.59 0.18 -2.88 16 17 C -0.11 -2.48 5.92 30.59 0.18 -2.30 16 18 C -0.11 -2.55 5.93 30.61 0.18 -2.37 16 19 C -0.11 -2.97 5.19 30.61 0.16 -2.81 16 20 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 21 H 0.07 3.26 8.05 -2.38 -0.02 3.24 16 22 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 23 H 0.05 1.95 7.90 -2.39 -0.02 1.93 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 25 H 0.03 1.43 7.29 -2.39 -0.02 1.42 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -62.29 264.78 5.07 -57.22 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.04 Total: 12.37 kcal Atomic # 6 Polarization: -62.02 SS G_CDS: 1.72 Total: -60.29 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.28 Total: -55.96 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -62.29 5.07 -57.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112635.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.560 kcal (2) G-P(sol) polarization free energy of solvation -62.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds