Wall clock time and date at job start Mon Mar 30 2020 02:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99591 * 2 1 4 4 H 1.48504 * 109.46696 * 90.00768 * 3 2 1 5 5 H 1.48505 * 109.46704 * 210.00065 * 3 2 1 6 6 H 1.48493 * 109.47173 * 330.00372 * 3 2 1 7 7 C 1.37873 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00231 * 359.97438 * 7 2 1 10 10 H 1.09001 * 115.54411 * 54.84610 * 9 7 2 11 11 C 1.52851 * 117.48741 * 200.46685 * 9 7 2 12 12 C 1.53576 * 60.20619 * 107.52623 * 11 9 7 13 13 C 1.54442 * 115.72592 * 105.65482 * 12 11 9 14 14 C 1.54051 * 112.04757 * 105.76305 * 13 12 11 15 15 C 1.50728 * 110.57669 * 319.48938 * 14 13 12 16 16 C 1.52897 * 108.71253 * 94.70996 * 15 14 13 17 17 C 1.46470 * 114.11154 * 274.24995 * 16 15 14 18 18 C 1.51148 * 117.71043 * 252.90059 * 12 11 9 19 19 H 0.97005 * 119.99911 * 179.97438 * 1 2 3 20 20 H 1.08998 * 117.47467 * 215.07364 * 11 9 7 21 21 H 1.09002 * 117.47919 * 359.97379 * 11 9 7 22 22 H 1.08997 * 108.96362 * 226.42598 * 13 12 11 23 23 H 1.09000 * 108.96454 * 345.09711 * 13 12 11 24 24 H 1.09001 * 109.25437 * 199.20694 * 14 13 12 25 25 H 1.09002 * 109.22598 * 79.75116 * 14 13 12 26 26 H 1.08997 * 109.59837 * 334.94302 * 15 14 13 27 27 H 1.08997 * 109.72586 * 214.55621 * 15 14 13 28 28 H 1.09002 * 108.55755 * 153.04729 * 16 15 14 29 29 H 1.08999 * 108.44009 * 35.36522 * 16 15 14 30 30 H 1.09002 * 109.24964 * 302.48721 * 17 16 15 31 31 H 1.09000 * 109.22306 * 183.04423 * 17 16 15 32 32 H 1.09003 * 109.39254 * 64.40181 * 18 12 11 33 33 H 1.08997 * 109.39395 * 184.21970 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5254 -2.6229 -0.8044 11 6 1.9988 -3.7454 0.4730 12 6 0.9128 -3.1229 1.3628 13 6 -0.4248 -3.8924 1.4258 14 6 -0.6026 -4.6343 2.7641 15 6 0.6972 -5.2613 3.1991 16 6 1.4100 -4.3016 4.1523 17 6 2.2344 -3.2940 3.4812 18 6 1.3595 -2.3758 2.5985 19 1 -0.4850 -0.8401 -0.0004 20 1 1.7654 -4.6893 -0.0195 21 1 3.0361 -3.6217 0.7843 22 1 -1.2458 -3.1866 1.3001 23 1 -0.4551 -4.6172 0.6122 24 1 -1.3557 -5.4134 2.6459 25 1 -0.9331 -3.9274 3.5252 26 1 1.3250 -5.4437 2.3269 27 1 0.4984 -6.2034 3.7098 28 1 2.0471 -4.8836 4.8183 29 1 0.6578 -3.7903 4.7530 30 1 2.9750 -3.7936 2.8566 31 1 2.7453 -2.6906 4.2315 32 1 1.9374 -1.5001 2.3028 33 1 0.4845 -2.0576 3.1652 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157362.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:03 Heat of formation + Delta-G solvation = -11.422382 kcal Electronic energy + Delta-G solvation = -12891.901137 eV Core-core repulsion = 10916.793819 eV Total energy + Delta-G solvation = -1975.107318 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.80974 -35.02291 -32.13582 -31.73939 -28.10746 -24.92410 -24.04851 -22.25916 -20.67311 -19.57166 -17.53227 -16.45075 -15.14525 -14.38763 -13.78990 -13.72935 -13.39913 -12.87515 -12.43491 -12.30110 -11.88846 -11.46446 -11.08155 -10.82379 -10.71309 -10.36824 -10.12002 -10.06378 -9.96016 -9.88620 -9.61507 -8.87452 -8.49401 -8.40569 -7.93425 -6.34493 -4.01313 3.43772 3.46806 3.62508 4.53295 4.96237 5.15922 5.36346 5.37766 5.48104 5.78462 5.84635 5.93745 6.01830 6.09260 6.16268 6.25631 6.39748 6.50667 6.56221 6.60369 6.64093 6.73368 6.75935 6.80161 6.89397 6.94734 7.26120 7.29077 7.47567 7.68308 8.32080 8.46211 8.90357 9.69200 11.06207 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.049237 B = 0.011742 C = 0.011020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.536714 B = 2384.119831 C = 2540.144303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.025 3.975 3 Si 1.066 2.934 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.567 4.567 8 H 0.049 0.951 9 C 0.009 3.991 10 H 0.049 0.951 11 C -0.192 4.192 12 C -0.137 4.137 13 C -0.076 4.076 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.117 4.117 18 C -0.065 4.065 19 H 0.273 0.727 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 -6.951 5.857 9.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.181 4.181 3 Si 0.895 3.105 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.605 4.605 8 H 0.068 0.932 9 C -0.010 4.010 10 H 0.067 0.933 11 C -0.230 4.230 12 C -0.138 4.138 13 C -0.114 4.114 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.146 4.146 17 C -0.155 4.155 18 C -0.102 4.102 19 H 0.084 0.916 20 H 0.081 0.919 21 H 0.093 0.907 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.059 -5.293 5.851 7.961 hybrid contribution 0.171 -1.833 0.024 1.841 sum 1.231 -7.126 5.875 9.317 Atomic orbital electron populations 1.70706 1.06851 1.31005 1.45252 1.25755 0.96553 1.02252 0.93503 0.83586 0.74796 0.75340 0.76819 1.21408 1.21471 1.20997 1.21425 0.93571 0.90429 1.55039 0.93225 1.20236 0.97137 0.92004 0.91587 0.93287 1.22981 0.96354 0.97329 1.06291 1.21580 0.93439 1.03564 0.95199 1.21507 0.96970 0.97332 0.95581 1.21406 0.96724 0.98684 0.98274 1.21112 0.97326 0.97037 0.99650 1.20390 0.99000 0.97248 0.97950 1.20651 0.98633 0.97456 0.98714 1.20772 0.98201 0.97942 0.93257 0.91641 0.91922 0.90702 0.92807 0.93510 0.93397 0.92534 0.91117 0.93381 0.93926 0.93050 0.92380 0.93313 0.89796 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.65 55.43 0.76 -26.15 16 2 C 0.02 0.70 5.46 -17.82 -0.10 0.61 16 3 Si 1.07 25.00 29.90 -169.99 -5.08 19.91 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.57 -15.75 7.28 -34.44 -0.25 -16.00 16 8 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 9 C 0.01 0.22 4.37 -91.49 -0.40 -0.18 16 10 H 0.05 1.32 7.95 -51.93 -0.41 0.91 16 11 C -0.19 -4.18 7.90 -26.51 -0.21 -4.39 16 12 C -0.14 -2.98 1.39 -154.03 -0.21 -3.19 16 13 C -0.08 -1.48 5.51 -25.43 -0.14 -1.62 16 14 C -0.11 -1.84 5.57 -27.32 -0.15 -1.99 16 15 C -0.11 -1.75 5.55 -27.92 -0.15 -1.91 16 16 C -0.11 -1.68 5.15 -29.90 -0.15 -1.83 16 17 C -0.12 -2.07 5.47 -29.04 -0.16 -2.23 16 18 C -0.06 -1.38 5.11 -26.86 -0.14 -1.52 16 19 H 0.27 8.14 7.27 -40.82 -0.30 7.85 16 20 H 0.06 1.26 8.01 -51.93 -0.42 0.84 16 21 H 0.07 1.63 7.33 -51.93 -0.38 1.25 16 22 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.05 0.87 7.83 -51.93 -0.41 0.46 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.92 7.11 -51.93 -0.37 0.55 16 26 H 0.07 1.18 6.35 -51.93 -0.33 0.85 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.79 7.26 -51.93 -0.38 0.41 16 30 H 0.06 1.05 6.66 -51.93 -0.35 0.70 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 2.06 6.24 -51.93 -0.32 1.73 16 33 H 0.04 0.95 7.84 -51.93 -0.41 0.55 16 LS Contribution 252.00 15.07 3.80 3.80 Total: -1.00 -28.37 252.00 -7.98 -36.35 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.39 Total: 0.34 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: -2.07 Total: -34.25 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.76 Total: -26.15 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.37 -7.98 -36.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157362.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.926 kcal (2) G-P(sol) polarization free energy of solvation -28.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds