Wall clock time and date at job start Mon Mar 30 2020 02:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00164 * 2 1 4 4 H 1.48494 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46992 * 300.00201 * 3 2 1 6 6 H 1.48500 * 109.46696 * 59.99833 * 3 2 1 7 7 C 1.37879 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00462 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47394 * 179.97438 * 9 7 2 11 11 C 1.46797 * 117.38140 * 175.00301 * 10 9 7 12 12 H 1.09003 * 107.07941 * 3.14064 * 11 10 9 13 13 C 1.52052 * 136.99179 * 217.71455 * 11 10 9 14 14 C 1.57943 * 99.74930 * 219.36458 * 13 11 10 15 15 C 1.50786 * 105.44887 * 325.66834 * 14 13 11 16 16 C 1.51212 * 105.79872 * 104.16500 * 15 14 13 17 17 C 1.49180 * 115.30473 * 261.94054 * 16 15 14 18 18 C 1.49431 * 117.37999 * 244.97130 * 10 9 7 19 19 H 1.08996 * 115.10209 * 144.87341 * 18 10 9 20 20 H 0.96998 * 119.99975 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47016 * 59.99744 * 9 7 2 22 22 H 1.08996 * 109.47621 * 300.00349 * 9 7 2 23 23 H 1.09002 * 115.41204 * 29.98433 * 10 9 7 24 24 H 1.08997 * 111.35640 * 101.73231 * 13 11 10 25 25 H 1.09004 * 111.35366 * 336.99783 * 13 11 10 26 26 H 1.08997 * 110.24168 * 206.68884 * 14 13 11 27 27 H 1.09001 * 110.36386 * 84.71229 * 14 13 11 28 28 H 1.08998 * 110.18023 * 223.23123 * 15 14 13 29 29 H 1.09006 * 110.17959 * 345.09762 * 15 14 13 30 30 H 1.08995 * 108.31079 * 23.44781 * 16 15 14 31 31 H 1.08997 * 108.31400 * 140.42632 * 16 15 14 32 32 H 1.09002 * 110.55953 * 298.94862 * 17 16 15 33 33 H 1.09001 * 110.56056 * 176.06238 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.6970 -5.0190 0.1160 12 1 0.6111 -4.9257 0.1264 13 6 2.0834 -6.3201 0.8015 14 6 1.6711 -7.3482 -0.3244 15 6 0.4516 -6.7547 -0.9833 16 6 0.9289 -6.1950 -2.3045 17 6 1.2072 -4.7294 -2.3129 18 6 2.2642 -4.5498 -1.2005 19 1 3.2465 -4.9328 -1.4770 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 3.1978 -3.4633 0.4927 24 1 1.5051 -6.4759 1.7122 25 1 3.1540 -6.3601 1.0026 26 1 1.4282 -8.3144 0.1178 27 1 2.4763 -7.4584 -1.0508 28 1 -0.2986 -7.5273 -1.1514 29 1 0.0400 -5.9576 -0.3641 30 1 1.8417 -6.7186 -2.5885 31 1 0.1706 -6.4040 -3.0590 32 1 0.3038 -4.1669 -2.0771 33 1 1.6107 -4.4219 -3.2777 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261173844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:47 Heat of formation + Delta-G solvation = 30.332869 kcal Electronic energy + Delta-G solvation = -12466.819931 eV Core-core repulsion = 10493.523256 eV Total energy + Delta-G solvation = -1973.296674 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.20756 -34.70058 -32.53982 -31.90151 -28.33114 -25.71402 -23.49741 -22.88550 -21.31493 -18.64518 -18.35478 -16.25231 -14.86834 -14.67474 -14.35983 -14.14949 -13.56547 -12.81862 -12.45348 -12.23995 -12.03259 -11.59970 -11.36503 -10.83908 -10.71699 -10.56397 -10.43445 -10.37605 -10.04084 -9.65302 -9.34614 -9.18405 -8.75269 -8.49117 -8.25714 -5.95922 -3.96729 3.33805 3.41093 3.45658 4.45003 4.55469 4.89454 5.09171 5.25759 5.36841 5.39805 5.52417 5.71465 5.76277 5.86324 6.01152 6.17218 6.19796 6.24034 6.25423 6.37898 6.44721 6.55011 6.65044 6.73127 6.80718 6.86257 7.03850 7.19243 7.73788 7.85759 8.04042 8.48711 9.09044 9.66203 11.15487 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.063374 B = 0.008443 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.716034 B = 3315.726833 C = 3435.302819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.044 3.956 10 C -0.079 4.079 11 C -0.205 4.205 12 H 0.089 0.911 13 C -0.076 4.076 14 C -0.116 4.116 15 C -0.143 4.143 16 C -0.111 4.111 17 C -0.081 4.081 18 C -0.155 4.155 19 H 0.078 0.922 20 H 0.259 0.741 21 H 0.024 0.976 22 H 0.018 0.982 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.164 -11.949 -1.864 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.007 3.993 10 C -0.097 4.097 11 C -0.223 4.223 12 H 0.106 0.894 13 C -0.113 4.113 14 C -0.154 4.154 15 C -0.179 4.179 16 C -0.149 4.149 17 C -0.119 4.119 18 C -0.173 4.173 19 H 0.097 0.903 20 H 0.069 0.931 21 H 0.042 0.958 22 H 0.036 0.964 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.995 -11.870 -1.891 12.184 hybrid contribution 0.482 0.914 -0.069 1.036 sum 2.477 -10.955 -1.960 11.402 Atomic orbital electron populations 1.69972 1.06008 1.26385 1.51330 1.25017 0.94845 0.99186 0.95553 0.86549 0.80138 0.83897 0.77507 1.19772 1.21070 1.21087 1.21280 0.93047 0.90824 1.49797 0.92627 1.18860 0.92994 0.90123 0.97289 1.21288 1.01684 0.91370 0.95365 1.21289 1.01395 0.96588 1.03011 0.89362 1.21729 1.00145 0.93077 0.96369 1.22398 0.97711 0.97183 0.98065 1.21526 0.97536 1.00897 0.97957 1.20770 1.00154 0.96795 0.97171 1.20689 0.98552 0.95152 0.97469 1.21825 0.98269 1.07242 0.89948 0.90338 0.93139 0.95755 0.96388 0.89620 0.91314 0.92271 0.93089 0.91837 0.93130 0.88415 0.92873 0.93774 0.91071 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.51 -14.70 9.08 -34.44 -0.31 -15.01 16 8 H 0.06 1.57 7.68 -52.49 -0.40 1.16 16 9 C 0.04 1.16 4.94 -27.88 -0.14 1.02 16 10 C -0.08 -1.70 5.39 -95.35 -0.51 -2.21 16 11 C -0.21 -3.66 3.44 -95.16 -0.33 -3.98 16 12 H 0.09 1.67 4.75 -51.93 -0.25 1.43 16 13 C -0.08 -1.10 7.21 -24.50 -0.18 -1.28 16 14 C -0.12 -1.50 6.08 -25.13 -0.15 -1.65 16 15 C -0.14 -1.96 5.64 -28.74 -0.16 -2.12 16 16 C -0.11 -1.58 5.01 -29.51 -0.15 -1.73 16 17 C -0.08 -1.38 5.95 -27.82 -0.17 -1.54 16 18 C -0.15 -2.86 5.39 -92.68 -0.50 -3.36 16 19 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.02 0.67 6.54 -51.93 -0.34 0.33 16 22 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.09 1.86 8.01 -51.93 -0.42 1.44 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.81 6.75 -51.93 -0.35 0.46 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.52 4.44 -51.93 -0.23 1.29 16 30 H 0.05 0.71 6.73 -51.93 -0.35 0.36 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.34 6.97 -51.93 -0.36 0.97 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 253.03 15.07 3.81 3.81 Total: -1.00 -29.41 253.03 -8.38 -37.79 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.21 Total: -1.69 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: -2.69 Total: -30.38 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.41 -8.38 -37.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261173844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.125 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds