Wall clock time and date at job start Mon Mar 30 2020 02:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00164 * 2 1 4 4 H 1.48494 * 109.47303 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46992 * 300.00201 * 3 2 1 6 6 H 1.48500 * 109.46696 * 59.99833 * 3 2 1 7 7 C 1.37879 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00462 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47394 * 179.97438 * 9 7 2 11 11 C 1.46797 * 117.38140 * 175.00301 * 10 9 7 12 12 H 1.09003 * 107.07941 * 3.14064 * 11 10 9 13 13 C 1.52052 * 136.99179 * 217.71455 * 11 10 9 14 14 C 1.57943 * 99.74930 * 219.36458 * 13 11 10 15 15 C 1.50786 * 105.44887 * 325.66834 * 14 13 11 16 16 C 1.51212 * 105.79872 * 104.16500 * 15 14 13 17 17 C 1.49180 * 115.30473 * 261.94054 * 16 15 14 18 18 C 1.49431 * 117.37999 * 244.97130 * 10 9 7 19 19 H 1.08996 * 115.10209 * 144.87341 * 18 10 9 20 20 H 0.96998 * 119.99975 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47016 * 59.99744 * 9 7 2 22 22 H 1.08996 * 109.47621 * 300.00349 * 9 7 2 23 23 H 1.09002 * 115.41204 * 29.98433 * 10 9 7 24 24 H 1.08997 * 111.35640 * 101.73231 * 13 11 10 25 25 H 1.09004 * 111.35366 * 336.99783 * 13 11 10 26 26 H 1.08997 * 110.24168 * 206.68884 * 14 13 11 27 27 H 1.09001 * 110.36386 * 84.71229 * 14 13 11 28 28 H 1.08998 * 110.18023 * 223.23123 * 15 14 13 29 29 H 1.09006 * 110.17959 * 345.09762 * 15 14 13 30 30 H 1.08995 * 108.31079 * 23.44781 * 16 15 14 31 31 H 1.08997 * 108.31400 * 140.42632 * 16 15 14 32 32 H 1.09002 * 110.55953 * 298.94862 * 17 16 15 33 33 H 1.09001 * 110.56056 * 176.06238 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.6970 -5.0190 0.1160 12 1 0.6111 -4.9257 0.1264 13 6 2.0834 -6.3201 0.8015 14 6 1.6711 -7.3482 -0.3244 15 6 0.4516 -6.7547 -0.9833 16 6 0.9289 -6.1950 -2.3045 17 6 1.2072 -4.7294 -2.3129 18 6 2.2642 -4.5498 -1.2005 19 1 3.2465 -4.9328 -1.4770 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 3.1978 -3.4633 0.4927 24 1 1.5051 -6.4759 1.7122 25 1 3.1540 -6.3601 1.0026 26 1 1.4282 -8.3144 0.1178 27 1 2.4763 -7.4584 -1.0508 28 1 -0.2986 -7.5273 -1.1514 29 1 0.0400 -5.9576 -0.3641 30 1 1.8417 -6.7186 -2.5885 31 1 0.1706 -6.4040 -3.0590 32 1 0.3038 -4.1669 -2.0771 33 1 1.6107 -4.4219 -3.2777 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261173844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:47 Heat of formation + Delta-G solvation = 14.954049 kcal Electronic energy + Delta-G solvation = -12467.486806 eV Core-core repulsion = 10493.523256 eV Total energy + Delta-G solvation = -1973.963550 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.60419 -36.22602 -34.61030 -33.12883 -30.32950 -27.16035 -24.93382 -24.69105 -22.63288 -20.09475 -19.83904 -18.40944 -16.60134 -16.33413 -15.68698 -15.49272 -14.91108 -14.37464 -14.19865 -13.72455 -13.44917 -13.23456 -13.12947 -12.65394 -12.47549 -12.25496 -11.84957 -11.58901 -11.47322 -11.38328 -10.95206 -10.86005 -10.53073 -10.22310 -10.07041 -8.19900 -6.30141 1.38666 1.39143 1.52749 2.40304 2.99394 3.14844 3.60464 3.90818 4.04497 4.09078 4.30583 4.41654 4.48543 4.51681 4.80709 4.85474 4.93575 4.95992 5.00598 5.11026 5.13743 5.28259 5.35369 5.37003 5.42404 5.54473 5.56259 5.60530 5.67821 5.73220 5.86516 6.27400 6.84976 7.38057 8.92028 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.063374 B = 0.008443 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.716034 B = 3315.726833 C = 3435.302819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.057 0.943 9 C 0.054 3.946 10 C -0.113 4.113 11 C -0.179 4.179 12 H 0.072 0.928 13 C -0.075 4.075 14 C -0.108 4.108 15 C -0.145 4.145 16 C -0.109 4.109 17 C -0.082 4.082 18 C -0.150 4.150 19 H 0.097 0.903 20 H 0.263 0.737 21 H 0.000 1.000 22 H -0.016 1.016 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 -13.239 -2.297 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.573 4.573 8 H 0.075 0.925 9 C 0.017 3.983 10 C -0.131 4.131 11 C -0.197 4.197 12 H 0.090 0.910 13 C -0.112 4.112 14 C -0.145 4.145 15 C -0.181 4.181 16 C -0.146 4.146 17 C -0.119 4.119 18 C -0.168 4.168 19 H 0.115 0.885 20 H 0.072 0.928 21 H 0.018 0.982 22 H 0.003 0.997 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.232 -13.173 -2.323 13.761 hybrid contribution 0.044 1.326 0.070 1.328 sum 3.276 -11.847 -2.252 12.497 Atomic orbital electron populations 1.70105 1.07761 1.27643 1.51959 1.25986 0.95801 1.03322 0.94844 0.85387 0.79018 0.78731 0.77848 1.18701 1.20248 1.20270 1.21683 0.93360 0.92210 1.50019 0.92486 1.18621 0.93245 0.91933 0.94454 1.21026 1.00561 0.91910 0.99581 1.21364 1.00271 0.95529 1.02498 0.90991 1.21852 1.01033 0.91147 0.97197 1.22363 0.97265 0.97457 0.97404 1.21506 0.98535 1.00746 0.97360 1.20733 1.01467 0.94425 0.97987 1.20744 0.96797 0.97179 0.97216 1.21888 0.99642 1.04876 0.90411 0.88467 0.92805 0.98157 0.99749 0.90068 0.90483 0.91209 0.90668 0.91007 0.91132 0.90871 0.91115 0.92467 0.94108 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.53 -31.71 9.08 25.60 0.23 -31.48 16 8 H 0.06 3.27 7.68 -2.91 -0.02 3.25 16 9 C 0.05 3.01 4.94 29.85 0.15 3.16 16 10 C -0.11 -4.98 5.39 -13.86 -0.07 -5.05 16 11 C -0.18 -6.33 3.44 -13.73 -0.05 -6.38 16 12 H 0.07 2.81 4.75 -2.39 -0.01 2.80 16 13 C -0.07 -2.00 7.21 32.04 0.23 -1.77 16 14 C -0.11 -2.39 6.08 31.63 0.19 -2.20 16 15 C -0.14 -3.65 5.64 29.29 0.17 -3.48 16 16 C -0.11 -2.84 5.01 28.79 0.14 -2.69 16 17 C -0.08 -2.76 5.95 29.89 0.18 -2.58 16 18 C -0.15 -5.47 5.39 -12.13 -0.07 -5.54 16 19 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 20 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 21 H 0.00 0.01 6.54 -2.38 -0.02 -0.01 16 22 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 23 H 0.08 3.60 8.01 -2.39 -0.02 3.58 16 24 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.52 6.75 -2.39 -0.02 1.50 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 29 H 0.07 2.24 4.44 -2.38 -0.01 2.23 16 30 H 0.07 1.63 6.73 -2.39 -0.02 1.62 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.60 6.97 -2.39 -0.02 1.58 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -64.78 253.03 4.94 -59.83 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.07 Total: 8.32 kcal Atomic # 6 Polarization: -59.24 SS G_CDS: 1.57 Total: -57.68 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.28 Total: -57.98 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -64.78 4.94 -59.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261173844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.787 kcal (2) G-P(sol) polarization free energy of solvation -64.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds