Wall clock time and date at job start Mon Mar 30 2020 02:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47225 * 2 1 4 4 N 1.40085 * 126.03663 * 90.02494 * 3 2 1 5 5 C 1.30833 * 108.20858 * 179.97438 * 4 3 2 6 6 C 1.39877 * 108.20100 * 0.02562 * 5 4 3 7 7 C 1.34945 * 126.03821 * 269.99892 * 3 2 1 8 8 C 1.50698 * 126.12786 * 0.02628 * 7 3 2 9 9 H 1.08998 * 109.47253 * 24.99066 * 8 7 3 10 10 C 1.53006 * 109.46784 * 264.99861 * 8 7 3 11 11 C 1.50694 * 109.47507 * 144.99814 * 8 7 3 12 12 H 1.08002 * 119.99810 * 359.97438 * 11 8 7 13 13 C 1.37875 * 120.00194 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00183 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 120.00252 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47335 * 59.99972 * 15 13 11 17 17 H 1.48496 * 109.47386 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47060 * 300.00101 * 15 13 11 19 19 H 1.09003 * 109.47054 * 299.99805 * 1 2 3 20 20 H 1.08997 * 109.46902 * 59.99642 * 1 2 3 21 21 H 1.08995 * 109.46879 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47054 * 240.00195 * 2 1 3 23 23 H 1.09006 * 109.47363 * 120.00021 * 2 1 3 24 24 H 1.07995 * 125.90631 * 179.97438 * 5 4 3 25 25 H 1.07996 * 126.04364 * 179.97438 * 6 5 4 26 26 H 1.08998 * 109.46577 * 299.99619 * 10 8 7 27 27 H 1.08996 * 109.47437 * 59.99704 * 10 8 7 28 28 H 1.09000 * 109.47151 * 180.02562 * 10 8 7 29 29 H 0.96999 * 120.00062 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2935 2.1580 1.1328 5 6 2.7091 3.3322 0.7322 6 6 2.7113 3.3410 -0.6665 7 6 2.2830 2.1297 -1.0912 8 6 2.1287 1.6947 -2.5258 9 1 1.3864 0.8989 -2.5863 10 6 3.4711 1.1809 -3.0501 11 6 1.6786 2.8661 -3.3602 12 1 1.5198 3.8291 -2.8979 13 6 1.4696 2.7083 -4.7139 14 7 1.6625 1.5355 -5.2768 15 14 0.9110 4.1601 -5.7482 16 1 1.9216 5.2450 -5.6653 17 1 0.7590 3.7315 -7.1618 18 1 -0.3924 4.6579 -5.2395 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 2.9994 4.1531 1.3710 25 1 3.0035 4.1683 -1.2963 26 1 4.2134 1.9767 -2.9895 27 1 3.7967 0.3337 -2.4465 28 1 3.3596 0.8667 -4.0878 29 1 1.5158 1.4246 -6.2292 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261223659.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:58 Heat of formation + Delta-G solvation = 44.014029 kcal Electronic energy + Delta-G solvation = -12269.173861 eV Core-core repulsion = 10192.930103 eV Total energy + Delta-G solvation = -2076.243758 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.98930 -36.38007 -35.23981 -33.09006 -30.27023 -29.50626 -27.20938 -24.73864 -23.60636 -21.75008 -20.21311 -18.07477 -17.62096 -16.42732 -15.99113 -15.69320 -14.94551 -14.61313 -14.27537 -13.73537 -13.53408 -13.26479 -12.89870 -12.84305 -12.76352 -12.47163 -12.21634 -12.13878 -11.85002 -11.29193 -11.02271 -10.49676 -9.96873 -9.21579 -8.12222 -6.24214 1.14898 1.45828 1.46468 1.54080 1.79886 2.12168 2.45731 3.17889 3.74547 4.12729 4.16820 4.26359 4.36145 4.57912 4.75395 4.79292 4.95409 5.00611 5.09226 5.13255 5.19819 5.35733 5.61031 5.81671 5.94767 5.98673 6.20032 6.42877 6.80574 6.98410 7.43541 8.93606 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.040744 B = 0.011840 C = 0.010751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.045308 B = 2364.378604 C = 2603.903714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.122 3.878 3 N -0.384 5.384 4 N -0.340 5.340 5 C 0.044 3.956 6 C -0.297 4.297 7 C 0.113 3.887 8 C 0.102 3.898 9 H 0.017 0.983 10 C -0.119 4.119 11 C -0.523 4.523 12 H 0.058 0.942 13 C 0.018 3.982 14 N -0.915 5.915 15 Si 0.956 3.044 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.275 1.275 19 H 0.057 0.943 20 H 0.039 0.961 21 H 0.104 0.896 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.211 0.789 25 H 0.138 0.862 26 H 0.029 0.971 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -1.174 6.917 7.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 N -0.167 5.167 4 N -0.161 5.161 5 C -0.141 4.141 6 C -0.326 4.326 7 C -0.015 4.015 8 C 0.081 3.919 9 H 0.035 0.965 10 C -0.177 4.177 11 C -0.562 4.562 12 H 0.076 0.924 13 C -0.181 4.181 14 N -0.554 5.554 15 Si 0.782 3.218 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.200 1.200 19 H 0.076 0.924 20 H 0.058 0.942 21 H 0.122 0.878 22 H 0.108 0.892 23 H 0.126 0.874 24 H 0.228 0.772 25 H 0.156 0.844 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.289 -2.163 7.780 8.080 hybrid contribution -0.110 1.187 -1.488 1.907 sum -0.398 -0.976 6.292 6.380 Atomic orbital electron populations 1.22096 0.93832 1.04105 1.01641 1.21813 0.95885 0.77529 1.04616 1.48884 1.52022 1.12667 1.03101 1.77061 1.24624 1.05236 1.09175 1.24226 0.98904 0.96139 0.94871 1.21318 1.17070 0.99175 0.95075 1.21935 0.95897 0.92382 0.91244 1.17369 0.94643 0.96075 0.83767 0.96467 1.21597 0.96299 0.97654 1.02169 1.21305 1.45582 0.96126 0.93183 0.92424 1.25650 0.95292 0.98311 0.98823 1.69968 1.49565 1.23992 1.11872 0.85632 0.78892 0.79763 0.77521 1.19493 1.20792 1.20041 0.92431 0.94206 0.87756 0.89184 0.87358 0.77224 0.84405 0.95135 0.95664 0.91139 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.62 10.24 71.98 0.74 -3.88 15 2 C 0.12 3.90 6.75 86.38 0.58 4.49 15 3 N -0.38 -15.43 3.61 -334.69 -1.21 -16.64 15 4 N -0.34 -13.33 12.57 -57.02 -0.72 -14.05 15 5 C 0.04 1.59 12.03 85.24 1.03 2.62 15 6 C -0.30 -12.61 9.70 21.99 0.21 -12.39 15 7 C 0.11 5.10 5.85 41.41 0.24 5.35 15 8 C 0.10 5.06 2.31 -12.29 -0.03 5.03 15 9 H 0.02 0.91 7.49 -2.39 -0.02 0.90 15 10 C -0.12 -5.67 8.95 71.98 0.64 -5.03 15 11 C -0.52 -28.22 8.25 25.60 0.21 -28.01 15 12 H 0.06 3.11 6.82 -2.91 -0.02 3.09 15 13 C 0.02 0.99 5.30 84.65 0.45 1.44 15 14 N -0.91 -50.62 11.32 21.45 0.24 -50.38 15 15 Si 0.96 42.60 29.54 68.60 2.03 44.63 15 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 18 H -0.28 -12.09 7.11 99.48 0.71 -11.39 15 19 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 20 H 0.04 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.09 2.88 7.55 -2.39 -0.02 2.86 15 23 H 0.11 2.89 8.14 -2.38 -0.02 2.87 15 24 H 0.21 5.62 8.06 -2.91 -0.02 5.59 15 25 H 0.14 5.80 7.65 -2.91 -0.02 5.78 15 26 H 0.03 1.42 8.14 -2.39 -0.02 1.40 15 27 H 0.02 1.06 8.14 -2.39 -0.02 1.04 15 28 H 0.07 3.65 6.07 -2.39 -0.01 3.64 15 29 H 0.26 13.91 8.31 -92.71 -0.77 13.14 15 Total: -1.00 -60.78 248.54 5.54 -55.25 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.12 Total: 11.58 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 4.08 Total: -30.39 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.68 Total: -81.07 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -60.78 5.54 -55.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261223659.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.261 kcal (2) G-P(sol) polarization free energy of solvation -60.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds