Wall clock time and date at job start Mon Mar 30 2020 01:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34516 * 125.78768 * 2 1 4 4 C 1.41382 * 106.83941 * 180.02562 * 3 2 1 5 5 C 1.50707 * 126.57797 * 180.02562 * 4 3 2 6 6 C 1.34509 * 106.84211 * 359.97438 * 4 3 2 7 7 C 1.50706 * 125.78934 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46953 * 89.99986 * 7 6 4 9 9 C 1.50706 * 109.46573 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72054 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47487 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47233 * 120.00158 * 13 11 9 16 16 H 1.48508 * 109.46883 * 239.99963 * 13 11 9 17 17 O 1.34299 * 108.42201 * 0.26472 * 6 4 3 18 18 H 1.08997 * 109.47656 * 89.99817 * 1 2 3 19 19 H 1.09006 * 109.46852 * 210.00077 * 1 2 3 20 20 H 1.09002 * 109.47267 * 329.99456 * 1 2 3 21 21 H 1.08007 * 126.58074 * 0.02562 * 3 2 1 22 22 H 1.09005 * 109.46603 * 269.95338 * 5 4 3 23 23 H 1.08994 * 109.46961 * 29.95533 * 5 4 3 24 24 H 1.08995 * 109.47073 * 149.95398 * 5 4 3 25 25 H 1.09000 * 109.46974 * 329.99735 * 7 6 4 26 26 H 1.09001 * 109.46547 * 209.99825 * 7 6 4 27 27 H 1.09000 * 109.47486 * 60.00062 * 8 7 6 28 28 H 1.09001 * 109.47362 * 299.99339 * 8 7 6 29 29 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 4.8732 1.4851 -0.0003 6 6 3.5814 -0.7121 -0.0004 7 6 4.7706 -1.6378 -0.0003 8 6 5.1731 -1.9507 1.4423 9 6 6.3620 -2.8769 1.4423 10 1 6.7850 -3.2126 0.5070 11 6 6.9063 -3.2998 2.6364 12 7 6.3878 -2.8953 3.7753 13 14 8.3804 -4.4472 2.6364 14 1 8.7702 -4.7524 1.2364 15 1 9.5160 -3.7942 3.3358 16 1 8.0264 -5.7078 3.3372 17 8 2.2925 -1.0894 -0.0055 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3634 0.8899 0.5139 21 1 1.9664 2.1205 0.0004 22 1 5.1729 1.6908 -1.0280 23 1 4.6688 2.4244 0.5135 24 1 5.6763 0.9571 0.5137 25 1 5.6039 -1.1587 -0.5143 26 1 4.5106 -2.5633 -0.5139 27 1 4.3398 -2.4298 1.9563 28 1 5.4332 -1.0252 1.9559 29 1 6.7706 -3.1932 4.6153 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261226617.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:11 Heat of formation + Delta-G solvation = -15.789317 kcal Electronic energy + Delta-G solvation = -11763.064361 eV Core-core repulsion = 9651.934584 eV Total energy + Delta-G solvation = -2111.129777 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.07426 -34.46315 -33.34204 -32.32077 -30.54356 -27.51648 -26.49616 -23.73153 -20.98848 -20.84215 -18.71122 -16.53194 -15.65839 -15.55457 -14.45146 -13.93844 -13.52272 -12.99439 -12.75703 -12.57496 -12.40861 -12.16058 -12.06549 -11.76747 -11.28334 -10.98320 -10.83454 -10.57151 -9.92667 -9.69436 -9.13782 -9.05749 -8.37201 -7.54110 -6.01383 -4.05177 2.25659 3.07206 3.30875 3.38127 3.42022 3.47166 4.44999 5.06768 5.34350 5.38318 5.40722 5.55864 5.59301 5.74127 5.92132 6.03115 6.08302 6.35809 6.42746 6.48739 6.61986 6.69027 6.91855 7.15736 7.65181 7.66413 7.85705 7.97506 8.35709 9.01585 9.59025 11.09772 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.057488 B = 0.007911 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.944122 B = 3538.559681 C = 3730.997857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.042 4.042 3 C -0.205 4.205 4 C -0.201 4.201 5 C -0.078 4.078 6 C 0.022 3.978 7 C -0.039 4.039 8 C 0.028 3.972 9 C -0.523 4.523 10 H 0.058 0.942 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 O -0.175 6.175 18 H 0.073 0.927 19 H 0.072 0.928 20 H 0.082 0.918 21 H 0.139 0.861 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.019 0.981 28 H 0.022 0.978 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 6.669 -7.119 12.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.092 4.092 3 C -0.224 4.224 4 C -0.202 4.202 5 C -0.135 4.135 6 C -0.029 4.029 7 C -0.076 4.076 8 C -0.009 4.009 9 C -0.561 4.561 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 O -0.072 6.072 18 H 0.092 0.908 19 H 0.091 0.909 20 H 0.100 0.900 21 H 0.157 0.843 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.574 6.360 -6.931 12.077 hybrid contribution 0.757 -0.392 0.203 0.876 sum -6.817 5.968 -6.728 11.285 Atomic orbital electron populations 1.20174 0.85862 1.03517 1.02722 1.22203 0.93739 0.84655 1.08564 1.21333 0.92577 0.98698 1.09810 1.20107 0.95508 0.93417 1.11169 1.20116 0.94196 0.98042 1.01180 1.23000 0.82898 0.94711 1.02249 1.20497 0.88800 0.95622 1.02707 1.19112 0.96481 0.97089 0.88257 1.21233 1.13913 1.28442 0.92536 0.92336 1.25021 0.97295 0.96442 0.95587 1.69988 1.41082 1.44833 0.97297 0.86508 0.82573 0.80632 0.78129 1.19656 1.20968 1.20996 1.83972 1.16799 1.34711 1.71672 0.90828 0.90897 0.89970 0.84338 0.92378 0.92351 0.90900 0.89997 0.91464 0.96281 0.95996 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.00 0.38 -0.39 15 2 C -0.04 -0.71 7.32 -35.63 -0.26 -0.97 15 3 C -0.20 -3.45 10.77 -39.70 -0.43 -3.88 15 4 C -0.20 -3.79 6.16 -104.74 -0.65 -4.43 15 5 C -0.08 -1.28 9.99 36.01 0.36 -0.92 15 6 C 0.02 0.45 6.57 -35.62 -0.23 0.22 15 7 C -0.04 -0.85 5.31 -27.88 -0.15 -1.00 15 8 C 0.03 0.74 4.96 -27.88 -0.14 0.60 15 9 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 15 10 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 12 N -0.89 -27.11 13.29 55.43 0.74 -26.38 15 13 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 15 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 16 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 17 O -0.17 -3.55 10.65 5.72 0.06 -3.49 15 18 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 19 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.08 0.78 8.14 -51.93 -0.42 0.35 15 21 H 0.14 1.91 8.06 -52.48 -0.42 1.49 15 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.07 1.28 7.78 -51.93 -0.40 0.88 15 25 H 0.08 1.66 7.76 -51.93 -0.40 1.25 15 26 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 27 H 0.02 0.55 8.14 -51.93 -0.42 0.12 15 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 15 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 255.65 15.07 3.85 3.85 Total: -1.00 -31.43 255.65 -6.05 -37.48 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -4.15 Total: -3.73 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -1.53 Total: -24.35 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: 0.06 Total: -3.49 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.43 -6.05 -37.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226617.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.692 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds