Wall clock time and date at job start Mon Mar 30 2020 01:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34516 * 125.78768 * 2 1 4 4 C 1.41382 * 106.83941 * 180.02562 * 3 2 1 5 5 C 1.50707 * 126.57797 * 180.02562 * 4 3 2 6 6 C 1.34509 * 106.84211 * 359.97438 * 4 3 2 7 7 C 1.50706 * 125.78934 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46953 * 89.99986 * 7 6 4 9 9 C 1.50706 * 109.46573 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72054 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47487 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47233 * 120.00158 * 13 11 9 16 16 H 1.48508 * 109.46883 * 239.99963 * 13 11 9 17 17 O 1.34299 * 108.42201 * 0.26472 * 6 4 3 18 18 H 1.08997 * 109.47656 * 89.99817 * 1 2 3 19 19 H 1.09006 * 109.46852 * 210.00077 * 1 2 3 20 20 H 1.09002 * 109.47267 * 329.99456 * 1 2 3 21 21 H 1.08007 * 126.58074 * 0.02562 * 3 2 1 22 22 H 1.09005 * 109.46603 * 269.95338 * 5 4 3 23 23 H 1.08994 * 109.46961 * 29.95533 * 5 4 3 24 24 H 1.08995 * 109.47073 * 149.95398 * 5 4 3 25 25 H 1.09000 * 109.46974 * 329.99735 * 7 6 4 26 26 H 1.09001 * 109.46547 * 209.99825 * 7 6 4 27 27 H 1.09000 * 109.47486 * 60.00062 * 8 7 6 28 28 H 1.09001 * 109.47362 * 299.99339 * 8 7 6 29 29 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 4.8732 1.4851 -0.0003 6 6 3.5814 -0.7121 -0.0004 7 6 4.7706 -1.6378 -0.0003 8 6 5.1731 -1.9507 1.4423 9 6 6.3620 -2.8769 1.4423 10 1 6.7850 -3.2126 0.5070 11 6 6.9063 -3.2998 2.6364 12 7 6.3878 -2.8953 3.7753 13 14 8.3804 -4.4472 2.6364 14 1 8.7702 -4.7524 1.2364 15 1 9.5160 -3.7942 3.3358 16 1 8.0264 -5.7078 3.3372 17 8 2.2925 -1.0894 -0.0055 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3634 0.8899 0.5139 21 1 1.9664 2.1205 0.0004 22 1 5.1729 1.6908 -1.0280 23 1 4.6688 2.4244 0.5135 24 1 5.6763 0.9571 0.5137 25 1 5.6039 -1.1587 -0.5143 26 1 4.5106 -2.5633 -0.5139 27 1 4.3398 -2.4298 1.9563 28 1 5.4332 -1.0252 1.9559 29 1 6.7706 -3.1932 4.6153 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261226617.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:11 Heat of formation + Delta-G solvation = -34.156667 kcal Electronic energy + Delta-G solvation = -11763.860829 eV Core-core repulsion = 9651.934584 eV Total energy + Delta-G solvation = -2111.926245 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.49748 -36.30306 -34.94320 -33.96876 -32.15756 -28.75753 -28.33625 -25.47474 -22.88494 -22.22449 -20.14523 -18.63968 -17.15799 -17.07394 -16.46150 -15.50181 -15.03966 -14.39410 -14.11216 -13.98462 -13.78284 -13.66663 -13.36537 -13.29204 -12.97994 -12.85482 -12.52722 -12.22667 -11.86856 -11.71772 -11.25993 -10.59785 -10.41102 -8.99651 -8.21831 -6.35251 0.83379 1.41015 1.41616 1.55394 1.68449 2.11468 2.41194 3.11208 3.83744 4.05098 4.07818 4.37843 4.56671 4.58899 4.67151 4.73235 4.81446 4.86005 4.94584 4.99436 5.06512 5.28701 5.41264 5.46958 5.54948 5.76690 5.81521 6.15714 6.35370 6.80841 7.34716 8.90344 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.057488 B = 0.007911 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.944122 B = 3538.559681 C = 3730.997857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.040 4.040 3 C -0.217 4.217 4 C -0.197 4.197 5 C -0.079 4.079 6 C -0.029 4.029 7 C -0.024 4.024 8 C 0.037 3.963 9 C -0.544 4.544 10 H 0.069 0.931 11 C 0.000 4.000 12 N -0.935 5.935 13 Si 0.971 3.029 14 H -0.258 1.258 15 H -0.276 1.276 16 H -0.279 1.279 17 O -0.200 6.200 18 H 0.097 0.903 19 H 0.074 0.926 20 H 0.109 0.891 21 H 0.173 0.827 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.095 0.905 26 H 0.067 0.933 27 H -0.019 1.019 28 H -0.004 1.004 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.676 7.325 -8.117 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.090 4.090 3 C -0.236 4.236 4 C -0.198 4.198 5 C -0.135 4.135 6 C -0.078 4.078 7 C -0.061 4.061 8 C 0.000 4.000 9 C -0.581 4.581 10 H 0.087 0.913 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.795 3.205 14 H -0.182 1.182 15 H -0.202 1.202 16 H -0.205 1.205 17 O -0.098 6.098 18 H 0.116 0.884 19 H 0.093 0.907 20 H 0.128 0.872 21 H 0.190 0.810 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.000 1.000 28 H 0.014 0.986 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.763 7.023 -7.946 13.143 hybrid contribution 0.700 -0.523 0.518 1.016 sum -7.062 6.500 -7.428 12.137 Atomic orbital electron populations 1.20449 0.82087 1.04974 1.04701 1.23322 0.95859 0.83838 1.05943 1.21740 0.91444 1.00394 1.10046 1.20596 0.97486 0.92997 1.08766 1.20189 0.92522 0.98172 1.02648 1.22795 0.83032 0.95384 1.06571 1.20146 0.90290 0.96367 0.99283 1.18910 0.94865 0.95233 0.90977 1.21668 1.14474 1.28798 0.93196 0.91317 1.26040 1.00607 0.98148 0.95025 1.70131 1.42915 1.46300 0.98137 0.85305 0.78299 0.78037 0.78826 1.18171 1.20194 1.20499 1.83936 1.16984 1.36560 1.72343 0.88437 0.90686 0.87230 0.80975 0.90064 0.90270 0.93015 0.88676 0.91431 1.00013 0.98592 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.42 71.23 0.74 -0.60 15 2 C -0.04 -1.30 7.32 24.83 0.18 -1.12 15 3 C -0.22 -6.88 10.77 22.19 0.24 -6.64 15 4 C -0.20 -7.31 6.16 -19.94 -0.12 -7.43 15 5 C -0.08 -2.47 9.99 71.24 0.71 -1.76 15 6 C -0.03 -1.21 6.57 24.83 0.16 -1.05 15 7 C -0.02 -1.07 5.31 29.85 0.16 -0.91 15 8 C 0.04 2.08 4.96 29.85 0.15 2.23 15 9 C -0.54 -31.45 9.11 25.60 0.23 -31.21 15 10 H 0.07 3.74 7.74 -2.91 -0.02 3.72 15 11 C 0.00 -0.02 5.46 84.66 0.46 0.44 15 12 N -0.93 -58.16 13.29 21.45 0.28 -57.87 15 13 Si 0.97 44.49 29.54 68.60 2.03 46.52 15 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 15 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 17 O -0.20 -8.23 10.65 -2.46 -0.03 -8.25 15 18 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 19 H 0.07 1.51 8.14 -2.38 -0.02 1.49 15 20 H 0.11 1.65 8.14 -2.39 -0.02 1.63 15 21 H 0.17 4.13 8.06 -2.91 -0.02 4.11 15 22 H 0.08 2.16 8.14 -2.38 -0.02 2.14 15 23 H 0.08 2.12 8.14 -2.39 -0.02 2.11 15 24 H 0.05 1.83 7.78 -2.39 -0.02 1.81 15 25 H 0.09 3.92 7.76 -2.39 -0.02 3.90 15 26 H 0.07 2.95 8.14 -2.39 -0.02 2.93 15 27 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 15 28 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 15 29 H 0.26 15.33 8.31 -92.71 -0.77 14.56 15 Total: -1.00 -69.30 255.65 6.31 -62.98 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.11 Total: 4.67 kcal Atomic # 6 Polarization: -50.97 SS G_CDS: 2.92 Total: -48.05 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.28 Total: -57.87 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.03 Total: -8.25 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -69.30 6.31 -62.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226617.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.826 kcal (2) G-P(sol) polarization free energy of solvation -69.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds