Wall clock time and date at job start Mon Mar 30 2020 02:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 N 1.46496 * 109.47303 * 119.99608 * 2 1 3 5 5 C 1.36885 * 126.39817 * 300.03186 * 4 2 1 6 6 C 1.34668 * 106.81551 * 179.97438 * 5 4 2 7 7 N 1.34128 * 108.02356 * 359.77459 * 6 5 4 8 8 C 1.30500 * 109.25239 * 0.37167 * 7 6 5 9 9 C 1.50700 * 125.64623 * 179.89691 * 8 7 6 10 10 C 1.50702 * 109.46869 * 269.68927 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 H 1.09000 * 109.46881 * 299.99737 * 1 2 3 19 19 H 1.08999 * 109.46837 * 59.99996 * 1 2 3 20 20 H 1.09000 * 109.46733 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47147 * 239.99783 * 2 1 3 22 22 H 1.09000 * 109.47512 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.46734 * 299.99661 * 3 2 1 24 24 H 1.08999 * 109.47261 * 59.99853 * 3 2 1 25 25 H 1.07993 * 126.59374 * 0.02562 * 5 4 2 26 26 H 1.08003 * 125.98642 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.47210 * 149.69220 * 9 8 7 28 28 H 1.08994 * 109.47551 * 29.68873 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7693 -0.3391 2.4955 6 6 2.4048 -1.2383 3.2709 7 7 3.0209 -2.1176 2.4671 8 6 2.7979 -1.7929 1.2229 9 6 3.3185 -2.5300 0.0160 10 6 4.6522 -1.9554 -0.3867 11 1 5.0802 -1.1385 0.1753 12 6 5.3290 -2.4768 -1.4690 13 7 4.8080 -3.4718 -2.1532 14 14 6.9857 -1.7696 -1.9635 15 1 8.0670 -2.4977 -1.2522 16 1 7.1699 -1.9188 -3.4295 17 1 7.0374 -0.3302 -1.6021 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 -0.8900 22 1 3.1301 1.4426 -0.0005 23 1 1.6768 1.9563 -0.8900 24 1 1.6767 1.9564 0.8900 25 1 1.1764 0.4977 2.8338 26 1 2.4132 -1.2516 4.3508 27 1 2.6129 -2.4224 -0.8078 28 1 3.4362 -3.5862 0.2580 29 1 5.2840 -3.8383 -2.9149 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261226817.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:17 Heat of formation + Delta-G solvation = 42.865014 kcal Electronic energy + Delta-G solvation = -12191.908679 eV Core-core repulsion = 10115.615096 eV Total energy + Delta-G solvation = -2076.293583 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.27639 -35.47695 -33.30797 -30.34633 -30.03695 -27.12850 -26.78369 -23.22987 -22.23764 -20.05041 -18.54923 -16.52235 -16.28971 -14.53906 -14.51704 -14.33544 -13.47789 -13.29934 -12.74793 -12.41444 -12.19896 -11.94811 -11.85498 -11.34969 -11.16735 -10.82935 -10.77833 -10.57940 -9.90582 -9.48166 -9.02547 -8.81192 -8.46624 -7.45451 -6.08211 -4.11885 2.88976 3.29920 3.36163 3.39440 3.52945 4.07211 4.44298 4.91712 5.19613 5.25836 5.33442 5.47754 5.62414 5.67598 5.78794 5.84007 6.02890 6.15723 6.25750 6.35313 6.40823 7.08966 7.34332 7.47808 7.66075 7.87212 8.04822 8.29470 8.90716 9.11122 9.51841 11.01535 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.037283 B = 0.011650 C = 0.010516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.835038 B = 2402.778722 C = 2662.045815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 C -0.156 4.156 4 N -0.453 5.453 5 C -0.090 4.090 6 C -0.038 4.038 7 N -0.513 5.513 8 C 0.262 3.738 9 C 0.094 3.906 10 C -0.510 4.510 11 H 0.056 0.944 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.274 1.274 18 H 0.057 0.943 19 H 0.071 0.929 20 H 0.061 0.939 21 H 0.113 0.887 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.157 0.843 26 H 0.155 0.845 27 H 0.032 0.968 28 H 0.051 0.949 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 8.395 2.664 11.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 C -0.214 4.214 4 N -0.136 5.136 5 C -0.223 4.223 6 C -0.186 4.186 7 N -0.231 5.231 8 C 0.000 4.000 9 C 0.055 3.945 10 C -0.549 4.549 11 H 0.074 0.926 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.726 3.274 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.199 1.199 18 H 0.076 0.924 19 H 0.089 0.911 20 H 0.080 0.920 21 H 0.131 0.869 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.174 0.826 26 H 0.173 0.827 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.151 7.693 2.663 10.836 hybrid contribution 0.401 1.149 -0.405 1.282 sum -6.750 8.842 2.258 11.351 Atomic orbital electron populations 1.22136 0.94326 1.02770 1.02318 1.21383 0.94302 0.94000 0.88115 1.22094 1.02717 0.94612 1.01986 1.45578 1.39022 1.23276 1.05746 1.22235 1.10746 1.05201 0.84082 1.22137 1.01979 0.95453 0.99018 1.70336 1.24537 1.28036 1.00163 1.24528 0.92218 0.87113 0.96181 1.17839 0.95672 0.95450 0.85510 1.20942 1.03253 1.17982 1.12715 0.92553 1.24961 0.98013 0.94939 0.96190 1.69947 1.38690 1.24897 1.19655 0.86492 0.84023 0.79440 0.77489 1.20409 1.21129 1.19936 0.92377 0.91054 0.91959 0.86939 0.91386 0.91188 0.92578 0.82572 0.82712 0.94954 0.93114 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.25 37.16 0.34 -1.67 15 2 C 0.13 2.03 3.52 -67.93 -0.24 1.79 15 3 C -0.16 -2.18 9.25 37.16 0.34 -1.84 15 4 N -0.45 -8.92 2.61 -106.83 -0.28 -9.20 15 5 C -0.09 -1.62 10.60 -16.56 -0.18 -1.79 15 6 C -0.04 -0.75 11.87 -17.81 -0.21 -0.96 15 7 N -0.51 -12.43 11.25 -10.82 -0.12 -12.56 15 8 C 0.26 6.28 7.09 -155.42 -1.10 5.18 15 9 C 0.09 2.48 5.12 -29.03 -0.15 2.33 15 10 C -0.51 -14.38 9.09 -34.44 -0.31 -14.69 15 11 H 0.06 1.62 7.74 -52.49 -0.41 1.22 15 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 13 N -0.89 -25.95 13.29 55.43 0.74 -25.21 15 14 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 15 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 18 H 0.06 0.68 7.95 -51.93 -0.41 0.27 15 19 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.11 2.04 6.67 -51.93 -0.35 1.69 15 22 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.06 0.71 7.95 -51.93 -0.41 0.29 15 25 H 0.16 2.18 8.06 -52.49 -0.42 1.75 15 26 H 0.16 2.54 8.06 -52.48 -0.42 2.12 15 27 H 0.03 0.84 7.08 -51.93 -0.37 0.48 15 28 H 0.05 1.45 8.14 -51.93 -0.42 1.03 15 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 251.79 15.07 3.79 3.79 Total: -1.00 -31.28 251.79 -6.53 -37.81 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.04 Total: -1.11 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.60 Total: -10.04 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.34 Total: -46.96 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.28 -6.53 -37.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226817.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.674 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds