Wall clock time and date at job start Mon Mar 30 2020 02:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 N 1.46496 * 109.47303 * 119.99608 * 2 1 3 5 5 C 1.36885 * 126.39817 * 300.03186 * 4 2 1 6 6 C 1.34668 * 106.81551 * 179.97438 * 5 4 2 7 7 N 1.34128 * 108.02356 * 359.77459 * 6 5 4 8 8 C 1.30500 * 109.25239 * 0.37167 * 7 6 5 9 9 C 1.50700 * 125.64623 * 179.89691 * 8 7 6 10 10 C 1.50702 * 109.46869 * 269.68927 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 H 1.09000 * 109.46881 * 299.99737 * 1 2 3 19 19 H 1.08999 * 109.46837 * 59.99996 * 1 2 3 20 20 H 1.09000 * 109.46733 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47147 * 239.99783 * 2 1 3 22 22 H 1.09000 * 109.47512 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.46734 * 299.99661 * 3 2 1 24 24 H 1.08999 * 109.47261 * 59.99853 * 3 2 1 25 25 H 1.07993 * 126.59374 * 0.02562 * 5 4 2 26 26 H 1.08003 * 125.98642 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.47210 * 149.69220 * 9 8 7 28 28 H 1.08994 * 109.47551 * 29.68873 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7693 -0.3391 2.4955 6 6 2.4048 -1.2383 3.2709 7 7 3.0209 -2.1176 2.4671 8 6 2.7979 -1.7929 1.2229 9 6 3.3185 -2.5300 0.0160 10 6 4.6522 -1.9554 -0.3867 11 1 5.0802 -1.1385 0.1753 12 6 5.3290 -2.4768 -1.4690 13 7 4.8080 -3.4718 -2.1532 14 14 6.9857 -1.7696 -1.9635 15 1 8.0670 -2.4977 -1.2522 16 1 7.1699 -1.9188 -3.4295 17 1 7.0374 -0.3302 -1.6021 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 -0.8900 22 1 3.1301 1.4426 -0.0005 23 1 1.6768 1.9563 -0.8900 24 1 1.6767 1.9564 0.8900 25 1 1.1764 0.4977 2.8338 26 1 2.4132 -1.2516 4.3508 27 1 2.6129 -2.4224 -0.8078 28 1 3.4362 -3.5862 0.2580 29 1 5.2840 -3.8383 -2.9149 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261226817.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:17 Heat of formation + Delta-G solvation = 23.762355 kcal Electronic energy + Delta-G solvation = -12192.737033 eV Core-core repulsion = 10115.615096 eV Total energy + Delta-G solvation = -2077.121937 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.86786 -36.81146 -35.44216 -32.28000 -31.50783 -28.63390 -28.17846 -25.27966 -23.63622 -21.61073 -20.13238 -18.60133 -17.88465 -16.51223 -16.06563 -15.67225 -14.92984 -14.67877 -14.39038 -14.09833 -13.75751 -13.44391 -13.11619 -13.05023 -12.69240 -12.63559 -12.35894 -12.05453 -11.84410 -11.60111 -10.70338 -10.64142 -10.39588 -9.07608 -8.23421 -6.37472 1.31846 1.39176 1.41481 1.51383 2.07654 2.32342 2.48175 3.06996 3.71654 3.98006 4.03227 4.08507 4.21603 4.59490 4.67229 4.68754 4.80985 4.83528 4.94761 5.11287 5.17873 5.25546 5.32024 5.65601 5.69492 6.01635 6.11759 6.51509 6.69499 7.30832 7.46142 8.85379 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.037283 B = 0.011650 C = 0.010516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.835038 B = 2402.778722 C = 2662.045815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.113 3.887 3 C -0.148 4.148 4 N -0.446 5.446 5 C -0.060 4.060 6 C -0.065 4.065 7 N -0.550 5.550 8 C 0.219 3.781 9 C 0.108 3.892 10 C -0.526 4.526 11 H 0.044 0.956 12 C 0.013 3.987 13 N -0.924 5.924 14 Si 0.966 3.034 15 H -0.276 1.276 16 H -0.272 1.272 17 H -0.267 1.267 18 H 0.079 0.921 19 H 0.099 0.901 20 H 0.045 0.955 21 H 0.081 0.919 22 H 0.037 0.963 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.209 0.791 26 H 0.186 0.814 27 H 0.023 0.977 28 H 0.013 0.987 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 10.854 3.019 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 C -0.206 4.206 4 N -0.129 5.129 5 C -0.192 4.192 6 C -0.212 4.212 7 N -0.270 5.270 8 C -0.044 4.044 9 C 0.070 3.930 10 C -0.565 4.565 11 H 0.063 0.937 12 C -0.186 4.186 13 N -0.563 5.563 14 Si 0.790 3.210 15 H -0.201 1.201 16 H -0.197 1.197 17 H -0.192 1.192 18 H 0.098 0.902 19 H 0.118 0.882 20 H 0.065 0.935 21 H 0.099 0.901 22 H 0.056 0.944 23 H 0.117 0.883 24 H 0.097 0.903 25 H 0.225 0.775 26 H 0.203 0.797 27 H 0.041 0.959 28 H 0.031 0.969 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.898 10.161 3.002 13.215 hybrid contribution 0.553 0.404 -0.467 0.829 sum -7.344 10.565 2.535 13.114 Atomic orbital electron populations 1.22089 0.91069 1.02546 1.04781 1.21702 0.96811 0.94642 0.85727 1.22064 1.00776 0.93134 1.04612 1.45773 1.37500 1.21966 1.07645 1.22988 1.08679 1.05008 0.82565 1.22743 1.02538 0.95475 1.00482 1.70195 1.25733 1.30058 1.00969 1.23810 0.95568 0.89723 0.95306 1.17409 0.95239 0.93671 0.86712 1.21104 1.04297 1.17990 1.13099 0.93731 1.25826 1.01789 0.95113 0.95905 1.70051 1.40319 1.25867 1.20073 0.85431 0.78986 0.78870 0.77667 1.20132 1.19711 1.19170 0.90249 0.88207 0.93541 0.90107 0.94350 0.88253 0.90264 0.77463 0.79703 0.95882 0.96916 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.25 71.98 0.67 -2.66 15 2 C 0.11 3.53 3.52 44.99 0.16 3.69 15 3 C -0.15 -3.73 9.25 71.98 0.67 -3.06 15 4 N -0.45 -17.20 2.61 -491.91 -1.28 -18.49 15 5 C -0.06 -1.95 10.60 83.09 0.88 -1.07 15 6 C -0.07 -2.49 11.87 83.52 0.99 -1.49 15 7 N -0.55 -27.18 11.25 -188.13 -2.12 -29.29 15 8 C 0.22 10.79 7.09 138.13 0.98 11.77 15 9 C 0.11 6.06 5.12 29.10 0.15 6.21 15 10 C -0.53 -30.84 9.09 25.60 0.23 -30.60 15 11 H 0.04 2.65 7.74 -2.91 -0.02 2.63 15 12 C 0.01 0.74 5.46 84.66 0.46 1.20 15 13 N -0.92 -55.07 13.29 21.45 0.28 -54.79 15 14 Si 0.97 44.54 29.54 68.60 2.03 46.57 15 15 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 15 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 18 H 0.08 1.48 7.95 -2.39 -0.02 1.46 15 19 H 0.10 1.71 8.14 -2.39 -0.02 1.69 15 20 H 0.05 1.20 8.14 -2.39 -0.02 1.18 15 21 H 0.08 3.01 6.67 -2.39 -0.02 3.00 15 22 H 0.04 1.18 8.14 -2.39 -0.02 1.17 15 23 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.08 1.63 7.95 -2.39 -0.02 1.61 15 25 H 0.21 4.54 8.06 -2.91 -0.02 4.52 15 26 H 0.19 5.63 8.06 -2.91 -0.02 5.60 15 27 H 0.02 1.29 7.08 -2.38 -0.02 1.27 15 28 H 0.01 0.78 8.14 -2.39 -0.02 0.76 15 29 H 0.27 14.93 8.31 -92.70 -0.77 14.16 15 Total: -1.00 -70.53 251.79 5.21 -65.32 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.11 Total: 6.69 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 5.19 Total: -16.01 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -3.11 Total: -102.57 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.53 5.21 -65.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226817.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.084 kcal (2) G-P(sol) polarization free energy of solvation -70.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds