Wall clock time and date at job start Mon Mar 30 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34520 * 125.78448 * 2 1 4 4 C 1.41378 * 106.83779 * 180.11490 * 3 2 1 5 5 C 1.50703 * 126.57875 * 179.83472 * 4 3 2 6 6 C 1.34513 * 106.84203 * 359.57078 * 4 3 2 7 7 C 1.50700 * 125.79094 * 180.22134 * 6 4 3 8 8 H 1.09001 * 109.46824 * 0.02562 * 7 6 4 9 9 C 1.53006 * 109.46761 * 120.00328 * 7 6 4 10 10 C 1.50694 * 109.47495 * 240.00278 * 7 6 4 11 11 H 1.07998 * 120.00114 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99886 * 179.97438 * 10 7 6 13 13 N 1.31506 * 120.00350 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99589 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47365 * 90.00607 * 14 12 10 16 16 H 1.48505 * 109.46933 * 210.00467 * 14 12 10 17 17 H 1.48495 * 109.47365 * 330.00233 * 14 12 10 18 18 O 1.34298 * 108.42121 * 0.26373 * 6 4 3 19 19 H 1.09006 * 109.46616 * 180.34566 * 1 2 3 20 20 H 1.08998 * 109.47443 * 300.33740 * 1 2 3 21 21 H 1.08999 * 109.47296 * 60.34500 * 1 2 3 22 22 H 1.08003 * 126.58074 * 359.95647 * 3 2 1 23 23 H 1.09002 * 109.47152 * 269.68807 * 5 4 3 24 24 H 1.09001 * 109.46980 * 149.68908 * 5 4 3 25 25 H 1.09004 * 109.47113 * 29.68888 * 5 4 3 26 26 H 1.09000 * 109.46607 * 180.02562 * 9 7 6 27 27 H 1.09000 * 109.47044 * 299.99954 * 9 7 6 28 28 H 1.08993 * 109.47017 * 60.00316 * 9 7 6 29 29 H 0.96995 * 120.00435 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0913 0.0000 4 6 3.6308 0.6322 -0.0027 5 6 4.8731 1.4853 -0.0072 6 6 3.5814 -0.7120 0.0054 7 6 4.7706 -1.6376 0.0108 8 1 5.6885 -1.0497 0.0075 9 6 4.7302 -2.5125 1.2654 10 6 4.7306 -2.5141 -1.2143 11 1 3.9248 -2.4110 -1.9260 12 6 5.7233 -3.4471 -1.4272 13 7 6.7047 -3.5723 -0.5610 14 14 5.6739 -4.5331 -2.9463 15 1 6.4053 -3.8680 -4.0544 16 1 6.3150 -5.8378 -2.6430 17 1 4.2623 -4.7570 -3.3491 18 8 2.2925 -1.0893 0.0070 19 1 -0.3633 -1.0277 0.0062 20 1 -0.3634 0.5190 0.8869 21 1 -0.3634 0.5085 -0.8930 22 1 1.9664 2.1205 -0.0007 23 1 5.1732 1.6847 -1.0360 24 1 5.6761 0.9603 0.5102 25 1 4.6686 2.4277 0.5008 26 1 5.5906 -3.1816 1.2695 27 1 4.7592 -1.8784 2.1516 28 1 3.8124 -3.1002 1.2690 29 1 7.4029 -4.2289 -0.7106 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261233577.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:16 Heat of formation + Delta-G solvation = -9.461005 kcal Electronic energy + Delta-G solvation = -12156.522138 eV Core-core repulsion = 10045.666778 eV Total energy + Delta-G solvation = -2110.855361 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.73681 -34.59427 -33.17130 -31.87340 -30.11301 -27.29841 -25.31171 -24.90934 -21.06662 -20.39043 -18.39183 -16.45142 -15.39731 -15.23210 -14.47195 -13.44245 -13.32292 -12.82538 -12.58525 -12.42609 -12.34965 -11.84990 -11.68845 -11.40853 -11.02276 -10.87493 -10.85950 -10.33125 -10.18121 -9.64396 -9.08167 -8.77619 -8.43079 -7.22627 -6.05393 -4.12507 2.60876 3.29595 3.35062 3.37229 3.43785 3.85008 4.41453 5.25557 5.32589 5.65503 5.65958 5.73002 5.87148 5.93780 6.11464 6.29231 6.45955 6.54311 6.80298 6.82527 6.96272 7.08515 7.16126 7.42223 7.58341 7.76662 8.02056 8.14861 8.35269 8.88252 9.51972 11.00047 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.040454 B = 0.011283 C = 0.010234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.979162 B = 2480.957216 C = 2735.398885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.059 4.059 3 C -0.204 4.204 4 C -0.230 4.230 5 C -0.069 4.069 6 C 0.063 3.937 7 C 0.109 3.891 8 H 0.060 0.940 9 C -0.137 4.137 10 C -0.511 4.511 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.890 5.890 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.274 1.274 18 O -0.167 6.167 19 H 0.069 0.931 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.133 0.867 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.011 0.989 28 H 0.031 0.969 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 6.303 1.473 9.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C -0.223 4.223 4 C -0.231 4.231 5 C -0.126 4.126 6 C 0.012 3.988 7 C 0.091 3.909 8 H 0.078 0.922 9 C -0.194 4.194 10 C -0.549 4.549 11 H 0.076 0.924 12 C -0.138 4.138 13 N -0.529 5.529 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 O -0.063 6.063 19 H 0.088 0.912 20 H 0.092 0.908 21 H 0.093 0.907 22 H 0.151 0.849 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.629 5.897 1.509 9.000 hybrid contribution -0.003 -0.350 -0.855 0.923 sum -6.632 5.548 0.655 8.671 Atomic orbital electron populations 1.20108 0.86361 1.03191 1.02324 1.22125 0.93650 0.85061 1.09995 1.21223 0.92747 0.98324 1.10041 1.20082 0.95179 0.93710 1.14134 1.20006 0.94055 0.97306 1.01233 1.23526 0.83049 0.94334 0.97938 1.17675 0.86142 0.91401 0.95684 0.92184 1.21798 1.02658 1.00046 0.94924 1.21033 1.09381 1.18571 1.05962 0.92388 1.24928 0.95129 0.97006 0.96734 1.69862 1.12243 1.35529 1.35263 0.86501 0.78304 0.79794 0.82929 1.20546 1.21065 1.19842 1.84016 1.17042 1.34157 1.71078 0.91157 0.90759 0.90721 0.84887 0.92431 0.91772 0.93025 0.89089 0.96946 0.94953 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.42 36.01 0.38 -0.48 15 2 C -0.06 -1.13 7.32 -35.62 -0.26 -1.39 15 3 C -0.20 -3.87 10.77 -39.70 -0.43 -4.30 15 4 C -0.23 -4.91 6.16 -104.74 -0.65 -5.55 15 5 C -0.07 -1.26 10.02 36.01 0.36 -0.90 15 6 C 0.06 1.51 5.76 -35.63 -0.21 1.30 15 7 C 0.11 2.85 2.65 -92.92 -0.25 2.60 15 8 H 0.06 1.62 6.78 -51.93 -0.35 1.26 15 9 C -0.14 -3.42 8.95 37.16 0.33 -3.09 15 10 C -0.51 -14.47 8.55 -34.44 -0.29 -14.77 15 11 H 0.06 1.68 7.74 -52.49 -0.41 1.27 15 12 C 0.06 1.76 5.30 -17.82 -0.09 1.67 15 13 N -0.89 -25.18 11.32 55.43 0.63 -24.56 15 14 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 15 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 18 O -0.17 -3.90 10.65 5.73 0.06 -3.84 15 19 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 20 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.13 2.09 8.06 -52.48 -0.42 1.67 15 23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.06 1.18 7.15 -51.93 -0.37 0.81 15 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.09 2.42 6.07 -51.93 -0.32 2.11 15 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 15 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 LS Contribution 249.84 15.07 3.76 3.76 Total: -1.00 -29.73 249.84 -5.64 -35.37 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -3.96 Total: -2.31 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -1.11 Total: -24.90 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.63 Total: -24.56 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: 0.06 Total: -3.84 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.73 -5.64 -35.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261233577.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.907 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds