Wall clock time and date at job start Mon Mar 30 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34520 * 125.78448 * 2 1 4 4 C 1.41378 * 106.83779 * 180.11490 * 3 2 1 5 5 C 1.50703 * 126.57875 * 179.83472 * 4 3 2 6 6 C 1.34513 * 106.84203 * 359.57078 * 4 3 2 7 7 C 1.50700 * 125.79094 * 180.22134 * 6 4 3 8 8 H 1.09001 * 109.46824 * 0.02562 * 7 6 4 9 9 C 1.53006 * 109.46761 * 120.00328 * 7 6 4 10 10 C 1.50694 * 109.47495 * 240.00278 * 7 6 4 11 11 H 1.07998 * 120.00114 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99886 * 179.97438 * 10 7 6 13 13 N 1.31506 * 120.00350 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99589 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47365 * 90.00607 * 14 12 10 16 16 H 1.48505 * 109.46933 * 210.00467 * 14 12 10 17 17 H 1.48495 * 109.47365 * 330.00233 * 14 12 10 18 18 O 1.34298 * 108.42121 * 0.26373 * 6 4 3 19 19 H 1.09006 * 109.46616 * 180.34566 * 1 2 3 20 20 H 1.08998 * 109.47443 * 300.33740 * 1 2 3 21 21 H 1.08999 * 109.47296 * 60.34500 * 1 2 3 22 22 H 1.08003 * 126.58074 * 359.95647 * 3 2 1 23 23 H 1.09002 * 109.47152 * 269.68807 * 5 4 3 24 24 H 1.09001 * 109.46980 * 149.68908 * 5 4 3 25 25 H 1.09004 * 109.47113 * 29.68888 * 5 4 3 26 26 H 1.09000 * 109.46607 * 180.02562 * 9 7 6 27 27 H 1.09000 * 109.47044 * 299.99954 * 9 7 6 28 28 H 1.08993 * 109.47017 * 60.00316 * 9 7 6 29 29 H 0.96995 * 120.00435 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0913 0.0000 4 6 3.6308 0.6322 -0.0027 5 6 4.8731 1.4853 -0.0072 6 6 3.5814 -0.7120 0.0054 7 6 4.7706 -1.6376 0.0108 8 1 5.6885 -1.0497 0.0075 9 6 4.7302 -2.5125 1.2654 10 6 4.7306 -2.5141 -1.2143 11 1 3.9248 -2.4110 -1.9260 12 6 5.7233 -3.4471 -1.4272 13 7 6.7047 -3.5723 -0.5610 14 14 5.6739 -4.5331 -2.9463 15 1 6.4053 -3.8680 -4.0544 16 1 6.3150 -5.8378 -2.6430 17 1 4.2623 -4.7570 -3.3491 18 8 2.2925 -1.0893 0.0070 19 1 -0.3633 -1.0277 0.0062 20 1 -0.3634 0.5190 0.8869 21 1 -0.3634 0.5085 -0.8930 22 1 1.9664 2.1205 -0.0007 23 1 5.1732 1.6847 -1.0360 24 1 5.6761 0.9603 0.5102 25 1 4.6686 2.4277 0.5008 26 1 5.5906 -3.1816 1.2695 27 1 4.7592 -1.8784 2.1516 28 1 3.8124 -3.1002 1.2690 29 1 7.4029 -4.2289 -0.7106 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261233577.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:16 Heat of formation + Delta-G solvation = -26.243111 kcal Electronic energy + Delta-G solvation = -12157.249865 eV Core-core repulsion = 10045.666778 eV Total energy + Delta-G solvation = -2111.583087 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.35293 -36.56075 -34.80820 -33.54015 -31.86091 -28.69567 -27.34840 -26.64332 -22.88414 -21.99458 -20.01671 -18.49795 -17.23532 -16.90419 -16.26133 -15.18641 -14.99799 -14.37662 -13.98695 -13.88995 -13.65464 -13.45377 -13.27072 -13.09094 -12.89602 -12.82839 -12.50766 -12.24881 -12.19760 -11.52394 -11.16096 -10.55740 -10.30382 -8.85955 -8.16213 -6.32316 1.02077 1.39408 1.40014 1.51099 1.80873 2.32384 2.40540 3.10284 3.97092 4.17147 4.25787 4.55755 4.64811 4.71390 4.77468 4.85828 4.87595 4.96873 5.01844 5.07404 5.09919 5.37766 5.44931 5.55845 5.69990 5.88464 5.94932 6.19726 6.56832 6.72215 7.35381 8.87481 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.040454 B = 0.011283 C = 0.010234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.979162 B = 2480.957216 C = 2735.398885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.057 4.057 3 C -0.213 4.213 4 C -0.226 4.226 5 C -0.070 4.070 6 C 0.009 3.991 7 C 0.110 3.890 8 H 0.042 0.958 9 C -0.125 4.125 10 C -0.535 4.535 11 H 0.041 0.959 12 C 0.021 3.979 13 N -0.911 5.911 14 Si 0.959 3.041 15 H -0.271 1.271 16 H -0.275 1.275 17 H -0.275 1.275 18 O -0.196 6.196 19 H 0.071 0.929 20 H 0.104 0.896 21 H 0.100 0.900 22 H 0.171 0.829 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.023 0.977 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.952 7.397 1.085 10.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.231 4.231 4 C -0.227 4.227 5 C -0.126 4.126 6 C -0.041 4.041 7 C 0.092 3.908 8 H 0.060 0.940 9 C -0.182 4.182 10 C -0.573 4.573 11 H 0.060 0.940 12 C -0.179 4.179 13 N -0.550 5.550 14 Si 0.784 3.216 15 H -0.197 1.197 16 H -0.200 1.200 17 H -0.200 1.200 18 O -0.094 6.094 19 H 0.090 0.910 20 H 0.122 0.878 21 H 0.118 0.882 22 H 0.188 0.812 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.892 7.000 1.128 10.609 hybrid contribution 0.318 -0.619 -0.708 0.993 sum -7.574 6.381 0.420 9.912 Atomic orbital electron populations 1.20387 0.82327 1.04213 1.04933 1.23299 0.95875 0.84126 1.07274 1.21622 0.91352 1.00107 1.10051 1.20597 0.97455 0.93075 1.11566 1.20090 0.92572 0.98157 1.01829 1.23170 0.83097 0.95096 1.02729 1.17415 0.86949 0.91387 0.95063 0.94028 1.21633 1.01156 0.99772 0.95678 1.21226 1.09331 1.19855 1.06867 0.94039 1.25675 0.94639 0.98042 0.99541 1.69958 1.12563 1.35948 1.36546 0.85543 0.78199 0.78320 0.79555 1.19664 1.19995 1.19956 1.83963 1.17195 1.36309 1.71902 0.91000 0.87802 0.88189 0.81167 0.91979 0.92914 0.89685 0.91011 0.95205 0.95755 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.48 10.42 71.24 0.74 -0.73 15 2 C -0.06 -2.06 7.32 24.83 0.18 -1.88 15 3 C -0.21 -7.52 10.77 22.19 0.24 -7.28 15 4 C -0.23 -9.45 6.16 -19.94 -0.12 -9.57 15 5 C -0.07 -2.46 10.02 71.24 0.71 -1.74 15 6 C 0.01 0.45 5.76 24.83 0.14 0.59 15 7 C 0.11 5.94 2.65 -12.29 -0.03 5.91 15 8 H 0.04 2.34 6.78 -2.39 -0.02 2.33 15 9 C -0.12 -6.44 8.95 71.98 0.64 -5.80 15 10 C -0.53 -31.18 8.55 25.60 0.22 -30.96 15 11 H 0.04 2.48 7.74 -2.91 -0.02 2.46 15 12 C 0.02 1.16 5.30 84.66 0.45 1.61 15 13 N -0.91 -52.39 11.32 21.45 0.24 -52.15 15 14 Si 0.96 44.40 29.54 68.60 2.03 46.42 15 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 17 H -0.27 -12.66 7.11 99.48 0.71 -11.95 15 18 O -0.20 -9.23 10.65 -2.40 -0.03 -9.25 15 19 H 0.07 1.69 8.14 -2.38 -0.02 1.67 15 20 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 22 H 0.17 4.61 8.06 -2.91 -0.02 4.59 15 23 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 24 H 0.05 1.95 7.15 -2.39 -0.02 1.93 15 25 H 0.08 2.38 8.14 -2.38 -0.02 2.36 15 26 H 0.07 3.94 6.07 -2.39 -0.01 3.93 15 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 15 28 H 0.02 1.22 8.14 -2.39 -0.02 1.20 15 29 H 0.27 14.41 8.31 -92.71 -0.77 13.64 15 Total: -1.00 -64.94 249.84 6.54 -58.40 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.12 Total: 6.44 kcal Atomic # 6 Polarization: -53.04 SS G_CDS: 3.18 Total: -49.86 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.24 Total: -52.15 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.03 Total: -9.25 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -64.94 6.54 -58.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261233577.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.158 kcal (2) G-P(sol) polarization free energy of solvation -64.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds