Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48498 * 109.47073 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47114 * 119.99620 * 3 2 1 6 6 H 1.48501 * 109.46897 * 239.99673 * 3 2 1 7 7 C 1.37883 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99712 * 171.02320 * 7 2 1 9 9 C 1.50694 * 120.00109 * 351.02358 * 7 2 1 10 10 H 1.09004 * 110.07503 * 57.88587 * 9 7 2 11 11 C 1.54179 * 110.10002 * 296.33157 * 9 7 2 12 12 C 1.52482 * 111.90280 * 298.55211 * 11 9 7 13 13 C 1.54027 * 112.06497 * 306.83219 * 12 11 9 14 14 C 1.50808 * 106.73842 * 56.05437 * 13 12 11 15 15 H 1.09001 * 109.25499 * 52.03970 * 14 13 12 16 16 C 1.48879 * 120.63694 * 179.80481 * 14 13 12 17 17 N 1.29276 * 107.57433 * 140.02964 * 16 14 13 18 18 N 1.41737 * 112.81649 * 0.23895 * 17 16 14 19 19 C 1.45282 * 104.56399 * 335.42329 * 18 17 16 20 20 H 1.09006 * 110.72662 * 279.82275 * 19 18 17 21 21 H 0.97008 * 119.99847 * 179.58575 * 1 2 3 22 22 H 1.08998 * 108.99926 * 59.17278 * 11 9 7 23 23 H 1.09004 * 109.00110 * 177.92415 * 11 9 7 24 24 H 1.08993 * 108.96393 * 67.49678 * 12 11 9 25 25 H 1.08996 * 108.96414 * 186.17422 * 12 11 9 26 26 H 1.09002 * 109.99993 * 175.35871 * 13 12 11 27 27 H 1.09000 * 110.00059 * 296.74863 * 13 12 11 28 28 H 1.08004 * 126.21312 * 320.02620 * 16 14 13 29 29 H 0.97005 * 127.75365 * 155.46666 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0746 -1.1999 -0.1454 9 6 1.2649 -2.4911 0.2047 10 1 0.4956 -2.6073 -0.5587 11 6 0.6274 -2.5222 1.6082 12 6 1.6764 -2.4360 2.7115 13 6 2.7739 -3.5048 2.5512 14 6 3.3590 -3.3233 1.1732 15 1 3.6492 -2.2810 1.0404 16 6 4.4599 -4.2037 0.6943 17 7 4.2280 -4.4785 -0.5474 18 7 3.0446 -3.8684 -1.0336 19 6 2.2308 -3.6545 0.1508 20 1 1.7228 -4.5742 0.4410 21 1 -0.4850 -0.8401 -0.0061 22 1 -0.0590 -1.6810 1.7049 23 1 0.0672 -3.4502 1.7230 24 1 2.1372 -1.4486 2.6857 25 1 1.1878 -2.5722 3.6762 26 1 3.5469 -3.3616 3.3062 27 1 2.3407 -4.5008 2.6439 28 1 5.2999 -4.5500 1.2783 29 1 2.8260 -3.6441 -1.9517 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261236013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = 53.218058 kcal Electronic energy + Delta-G solvation = -12792.758581 eV Core-core repulsion = 10716.913940 eV Total energy + Delta-G solvation = -2075.844641 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.84525 -35.67252 -32.77554 -30.67713 -28.57609 -27.94598 -24.47479 -21.82597 -21.07811 -19.97189 -19.19041 -16.60075 -15.65857 -14.71781 -13.99450 -13.83557 -13.48222 -13.42231 -12.52810 -12.21720 -11.73123 -11.17012 -11.01937 -10.86756 -10.75189 -10.50720 -10.11306 -9.83067 -9.64068 -9.18700 -9.13255 -8.53639 -8.25290 -7.09085 -6.34841 -4.05148 2.82111 3.42002 3.42286 3.60995 3.92881 4.50769 5.29080 5.33528 5.39740 5.62878 5.73228 6.04789 6.18214 6.25079 6.29141 6.39281 6.41124 6.56654 6.77729 6.92154 7.09598 7.20272 7.25767 7.36651 7.48449 8.20464 8.40037 8.43310 8.84243 8.91880 9.63385 11.01107 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.038068 B = 0.015232 C = 0.013738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.349269 B = 1837.737981 C = 2037.708165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 1.059 2.941 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.582 4.582 8 H 0.054 0.946 9 C 0.038 3.962 10 H 0.020 0.980 11 C -0.111 4.111 12 C -0.102 4.102 13 C -0.088 4.088 14 C -0.125 4.125 15 H 0.116 0.884 16 C 0.024 3.976 17 N -0.247 5.247 18 N -0.660 5.660 19 C 0.139 3.861 20 H 0.033 0.967 21 H 0.270 0.730 22 H 0.067 0.933 23 H 0.023 0.977 24 H 0.068 0.932 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.176 0.824 29 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -5.022 4.215 8.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.182 4.182 3 Si 0.888 3.112 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.620 4.620 8 H 0.072 0.928 9 C 0.019 3.981 10 H 0.038 0.962 11 C -0.150 4.150 12 C -0.140 4.140 13 C -0.127 4.127 14 C -0.146 4.146 15 H 0.133 0.867 16 C -0.191 4.191 17 N -0.051 5.051 18 N -0.406 5.406 19 C 0.031 3.969 20 H 0.051 0.949 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 4.905 -3.860 3.275 7.048 hybrid contribution -0.305 -1.137 0.280 1.210 sum 4.600 -4.997 3.555 7.666 Atomic orbital electron populations 1.70806 1.06903 1.30738 1.46141 1.25675 0.96442 1.02299 0.93783 0.83671 0.75062 0.75914 0.76529 1.20887 1.21430 1.21672 1.21792 0.95014 0.91287 1.53872 0.92817 1.18782 0.93585 0.93164 0.92614 0.96165 1.21637 0.97604 0.99275 0.96438 1.21391 0.96240 0.99297 0.97041 1.21046 0.97743 0.98764 0.95145 1.21785 0.93533 1.02640 0.96613 0.86682 1.26461 0.99807 0.97757 0.95106 1.75397 1.04349 1.11613 1.13713 1.48188 1.13293 1.71554 1.07559 1.21747 0.93411 0.97046 0.84648 0.94916 0.91822 0.91423 0.95818 0.91338 0.94150 0.92496 0.93091 0.80666 0.72712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.20 12.95 55.43 0.72 -25.48 15 2 C 0.02 0.61 5.22 -17.82 -0.09 0.52 15 3 Si 1.06 24.58 29.91 -169.99 -5.08 19.49 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 15 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.58 -15.17 6.66 -34.44 -0.23 -15.40 15 8 H 0.05 1.45 6.22 -52.48 -0.33 1.12 15 9 C 0.04 0.92 2.28 -92.01 -0.21 0.71 15 10 H 0.02 0.53 7.64 -51.93 -0.40 0.13 15 11 C -0.11 -2.43 5.01 -26.38 -0.13 -2.57 15 12 C -0.10 -1.98 5.50 -26.46 -0.15 -2.13 15 13 C -0.09 -1.51 5.87 -27.29 -0.16 -1.67 15 14 C -0.12 -2.41 2.27 -92.23 -0.21 -2.62 15 15 H 0.12 2.56 5.28 -51.93 -0.27 2.28 15 16 C 0.02 0.42 12.03 -14.22 -0.17 0.25 15 17 N -0.25 -4.84 12.28 32.43 0.40 -4.44 15 18 N -0.66 -13.80 7.75 -5.00 -0.04 -13.84 15 19 C 0.14 2.97 2.94 -67.93 -0.20 2.77 15 20 H 0.03 0.71 7.86 -51.93 -0.41 0.30 15 21 H 0.27 7.76 6.10 -40.82 -0.25 7.51 15 22 H 0.07 1.64 6.29 -51.93 -0.33 1.32 15 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 15 24 H 0.07 1.46 7.72 -51.93 -0.40 1.05 15 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.05 0.83 7.97 -51.93 -0.41 0.42 15 28 H 0.18 2.27 8.06 -52.48 -0.42 1.85 15 29 H 0.43 8.57 8.96 -181.33 -1.63 6.94 15 LS Contribution 228.52 15.07 3.44 3.44 Total: -1.00 -28.70 228.52 -7.02 -35.72 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.91 Total: 5.25 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.55 Total: -20.14 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 1.08 Total: -43.76 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.49 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.70 -7.02 -35.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.935 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds