Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48498 * 109.47073 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47114 * 119.99620 * 3 2 1 6 6 H 1.48501 * 109.46897 * 239.99673 * 3 2 1 7 7 C 1.37883 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99712 * 171.02320 * 7 2 1 9 9 C 1.50694 * 120.00109 * 351.02358 * 7 2 1 10 10 H 1.09004 * 110.07503 * 57.88587 * 9 7 2 11 11 C 1.54179 * 110.10002 * 296.33157 * 9 7 2 12 12 C 1.52482 * 111.90280 * 298.55211 * 11 9 7 13 13 C 1.54027 * 112.06497 * 306.83219 * 12 11 9 14 14 C 1.50808 * 106.73842 * 56.05437 * 13 12 11 15 15 H 1.09001 * 109.25499 * 52.03970 * 14 13 12 16 16 C 1.48879 * 120.63694 * 179.80481 * 14 13 12 17 17 N 1.29276 * 107.57433 * 140.02964 * 16 14 13 18 18 N 1.41737 * 112.81649 * 0.23895 * 17 16 14 19 19 C 1.45282 * 104.56399 * 335.42329 * 18 17 16 20 20 H 1.09006 * 110.72662 * 279.82275 * 19 18 17 21 21 H 0.97008 * 119.99847 * 179.58575 * 1 2 3 22 22 H 1.08998 * 108.99926 * 59.17278 * 11 9 7 23 23 H 1.09004 * 109.00110 * 177.92415 * 11 9 7 24 24 H 1.08993 * 108.96393 * 67.49678 * 12 11 9 25 25 H 1.08996 * 108.96414 * 186.17422 * 12 11 9 26 26 H 1.09002 * 109.99993 * 175.35871 * 13 12 11 27 27 H 1.09000 * 110.00059 * 296.74863 * 13 12 11 28 28 H 1.08004 * 126.21312 * 320.02620 * 16 14 13 29 29 H 0.97005 * 127.75365 * 155.46666 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0746 -1.1999 -0.1454 9 6 1.2649 -2.4911 0.2047 10 1 0.4956 -2.6073 -0.5587 11 6 0.6274 -2.5222 1.6082 12 6 1.6764 -2.4360 2.7115 13 6 2.7739 -3.5048 2.5512 14 6 3.3590 -3.3233 1.1732 15 1 3.6492 -2.2810 1.0404 16 6 4.4599 -4.2037 0.6943 17 7 4.2280 -4.4785 -0.5474 18 7 3.0446 -3.8684 -1.0336 19 6 2.2308 -3.6545 0.1508 20 1 1.7228 -4.5742 0.4410 21 1 -0.4850 -0.8401 -0.0061 22 1 -0.0590 -1.6810 1.7049 23 1 0.0672 -3.4502 1.7230 24 1 2.1372 -1.4486 2.6857 25 1 1.1878 -2.5722 3.6762 26 1 3.5469 -3.3616 3.3062 27 1 2.3407 -4.5008 2.6439 28 1 5.2999 -4.5500 1.2783 29 1 2.8260 -3.6441 -1.9517 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261236013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = 34.337179 kcal Electronic energy + Delta-G solvation = -12793.577317 eV Core-core repulsion = 10716.913940 eV Total energy + Delta-G solvation = -2076.663378 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.44783 -37.35438 -34.63834 -32.37860 -30.20006 -29.61312 -26.49544 -23.44460 -22.71809 -21.50234 -20.93340 -18.45717 -17.39014 -16.31251 -15.70510 -15.56971 -15.18326 -15.02092 -14.23509 -13.84674 -13.43889 -12.96394 -12.68882 -12.61447 -12.46420 -12.19006 -11.96491 -11.48110 -11.23297 -10.86815 -10.76556 -10.48448 -10.29283 -8.69412 -8.51362 -6.20783 1.41356 1.52515 1.58151 1.76830 2.39244 2.57977 3.25190 3.73144 3.91817 4.11453 4.28026 4.45277 4.55249 4.64533 4.69780 4.73213 4.90576 5.01003 5.13365 5.29876 5.45082 5.51289 5.60956 5.66361 5.83566 6.17316 6.29901 6.70562 6.85924 7.34375 7.54334 8.84792 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.038068 B = 0.015232 C = 0.013738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.349269 B = 1837.737981 C = 2037.708165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.026 4.026 3 Si 1.101 2.899 4 H -0.289 1.289 5 H -0.268 1.268 6 H -0.281 1.281 7 C -0.572 4.572 8 H 0.046 0.954 9 C 0.035 3.965 10 H -0.017 1.017 11 C -0.107 4.107 12 C -0.100 4.100 13 C -0.079 4.079 14 C -0.118 4.118 15 H 0.088 0.912 16 C 0.051 3.949 17 N -0.271 5.271 18 N -0.677 5.677 19 C 0.135 3.865 20 H 0.032 0.968 21 H 0.258 0.742 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.229 0.771 29 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.869 -5.814 5.849 10.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.225 4.225 3 Si 0.925 3.075 4 H -0.215 1.215 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.610 4.610 8 H 0.064 0.936 9 C 0.015 3.985 10 H 0.001 0.999 11 C -0.146 4.146 12 C -0.138 4.138 13 C -0.118 4.118 14 C -0.139 4.139 15 H 0.105 0.895 16 C -0.164 4.164 17 N -0.074 5.074 18 N -0.422 5.422 19 C 0.027 3.973 20 H 0.050 0.950 21 H 0.069 0.931 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.245 0.755 29 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.924 -4.675 4.911 9.691 hybrid contribution -0.929 -0.928 -0.232 1.334 sum 5.996 -5.603 4.679 9.446 Atomic orbital electron populations 1.70911 1.07851 1.30035 1.48719 1.26873 0.96487 1.05643 0.93481 0.83117 0.74281 0.72516 0.77582 1.21479 1.19355 1.20728 1.21939 0.94565 0.92189 1.52298 0.93599 1.18740 0.93264 0.93663 0.92822 0.99901 1.21546 0.98106 0.98614 0.96294 1.21359 0.96267 0.99144 0.96994 1.21037 0.97676 0.98533 0.94538 1.21754 0.93389 1.01430 0.97318 0.89479 1.27216 0.99707 0.95281 0.94166 1.75442 1.04015 1.13056 1.14912 1.48275 1.14113 1.72466 1.07389 1.21620 0.93869 0.95605 0.86179 0.95035 0.93134 0.94521 0.94421 0.93630 0.91524 0.88822 0.91476 0.75529 0.73082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.68 12.95 21.45 0.28 -55.41 15 2 C -0.03 -1.45 5.22 84.66 0.44 -1.01 15 3 Si 1.10 49.66 29.91 68.60 2.05 51.72 15 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 15 5 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 7 C -0.57 -30.28 6.66 25.60 0.17 -30.11 15 8 H 0.05 2.48 6.22 -2.91 -0.02 2.46 15 9 C 0.04 1.71 2.28 -11.70 -0.03 1.68 15 10 H -0.02 -0.94 7.64 -2.39 -0.02 -0.96 15 11 C -0.11 -4.71 5.01 30.82 0.15 -4.55 15 12 C -0.10 -3.68 5.50 30.77 0.17 -3.51 15 13 C -0.08 -2.40 5.87 30.23 0.18 -2.22 15 14 C -0.12 -4.23 2.27 -11.84 -0.03 -4.26 15 15 H 0.09 3.71 5.28 -2.39 -0.01 3.70 15 16 C 0.05 1.57 12.03 87.92 1.06 2.63 15 17 N -0.27 -10.03 12.28 -51.32 -0.63 -10.66 15 18 N -0.68 -28.07 7.75 -169.73 -1.32 -29.38 15 19 C 0.14 5.70 2.94 45.64 0.13 5.83 15 20 H 0.03 1.34 7.86 -2.38 -0.02 1.32 15 21 H 0.26 15.55 6.10 -92.70 -0.57 14.99 15 22 H 0.04 1.82 6.29 -2.39 -0.02 1.81 15 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 24 H 0.04 1.87 7.72 -2.39 -0.02 1.85 15 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.09 2.23 8.14 -2.39 -0.02 2.21 15 27 H 0.07 1.87 7.97 -2.39 -0.02 1.85 15 28 H 0.23 4.44 8.06 -2.91 -0.02 4.41 15 29 H 0.42 17.36 8.96 -212.24 -1.90 15.46 15 Total: -1.00 -63.14 228.52 2.09 -61.05 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -0.55 Total: 18.20 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 2.25 Total: -35.52 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -1.67 Total: -95.44 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.72 kcal Total: -63.14 2.09 -61.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.386 kcal (2) G-P(sol) polarization free energy of solvation -63.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds