Wall clock time and date at job start Mon Mar 30 2020 01:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.41379 * 126.57964 * 265.02889 * 3 2 1 5 5 C 1.34515 * 106.83835 * 179.97438 * 4 3 2 6 6 O 1.34297 * 108.42120 * 359.97438 * 5 4 3 7 7 C 1.34304 * 109.47987 * 359.77209 * 6 5 4 8 8 C 1.50696 * 125.79573 * 180.24009 * 7 6 5 9 9 H 1.08997 * 109.47211 * 180.15911 * 8 7 6 10 10 C 1.53004 * 109.47120 * 300.16389 * 8 7 6 11 11 C 1.50702 * 109.46889 * 60.15798 * 8 7 6 12 12 H 1.07999 * 120.00060 * 0.02562 * 11 8 7 13 13 C 1.37885 * 119.99815 * 180.02562 * 11 8 7 14 14 N 1.31517 * 120.00078 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99731 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47646 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46876 * 120.00341 * 15 13 11 18 18 H 1.48497 * 109.47271 * 240.00224 * 15 13 11 19 19 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 24 24 H 1.08000 * 126.58200 * 359.97438 * 4 3 2 25 25 H 1.08003 * 125.78660 * 180.02562 * 5 4 3 26 26 H 1.08995 * 109.47133 * 180.02562 * 10 8 7 27 27 H 1.09006 * 109.46592 * 299.99931 * 10 8 7 28 28 H 1.08994 * 109.46895 * 59.99210 * 10 8 7 29 29 H 0.96993 * 119.99666 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4059 2.1824 -1.1310 5 6 2.7903 3.3894 -0.6784 6 8 2.6694 3.3994 0.6590 7 6 2.2051 2.2100 1.0756 8 6 1.9284 1.8236 2.5057 9 1 1.5624 0.7975 2.5405 10 6 3.2176 1.9333 3.3222 11 6 0.8878 2.7480 3.0834 12 1 0.4685 3.5361 2.4756 13 6 0.4710 2.5875 4.3879 14 7 0.9820 1.6280 5.1281 15 14 -0.8193 3.7329 5.1037 16 1 -1.2315 4.7198 4.0735 17 1 -2.0010 2.9416 5.5313 18 1 -0.2518 4.4474 6.2752 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 2.3865 1.8575 -2.1608 25 1 3.1365 4.2114 -1.2875 26 1 3.0176 1.6534 4.3565 27 1 3.9703 1.2647 2.9043 28 1 3.5836 2.9594 3.2873 29 1 0.6891 1.5154 6.0459 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244237.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:29 Heat of formation + Delta-G solvation = -9.431202 kcal Electronic energy + Delta-G solvation = -12283.051326 eV Core-core repulsion = 10172.197257 eV Total energy + Delta-G solvation = -2110.854068 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.71307 -34.81001 -33.82606 -31.03862 -30.32884 -27.20131 -25.18107 -23.12444 -21.81123 -20.19042 -18.52973 -16.49057 -15.92358 -14.97076 -14.65141 -14.02038 -13.40275 -12.91059 -12.63392 -12.35134 -11.86799 -11.72952 -11.41952 -10.96319 -10.86384 -10.69206 -10.46059 -10.25328 -10.18710 -9.64806 -9.07406 -8.88090 -8.43898 -7.36336 -6.05952 -4.12832 2.67149 3.28050 3.35380 3.38331 3.44251 3.99903 4.41124 5.25216 5.47938 5.54531 5.77887 5.87480 6.02363 6.17386 6.31689 6.46186 6.56582 6.78501 6.82716 6.88904 6.96310 7.07575 7.14636 7.39458 7.58080 7.76270 8.01926 8.13390 8.34468 8.88344 9.51737 10.99535 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.037416 B = 0.012261 C = 0.011450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.164558 B = 2283.063332 C = 2444.761044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.227 4.227 4 C -0.206 4.206 5 C -0.084 4.084 6 O -0.170 6.170 7 C 0.065 3.935 8 C 0.109 3.891 9 H 0.061 0.939 10 C -0.137 4.137 11 C -0.510 4.510 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.890 5.890 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 H 0.067 0.933 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.133 0.867 25 H 0.188 0.812 26 H 0.091 0.909 27 H 0.011 0.989 28 H 0.031 0.969 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -0.796 -7.898 8.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.228 4.228 4 C -0.225 4.225 5 C -0.151 4.151 6 O -0.065 6.065 7 C 0.014 3.986 8 C 0.091 3.909 9 H 0.078 0.922 10 C -0.195 4.195 11 C -0.548 4.548 12 H 0.077 0.923 13 C -0.138 4.138 14 N -0.528 5.528 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 H 0.086 0.914 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.151 0.849 25 H 0.205 0.795 26 H 0.109 0.891 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.521 -0.628 -7.530 7.707 hybrid contribution -0.683 0.602 0.056 0.912 sum 0.838 -0.025 -7.474 7.521 Atomic orbital electron populations 1.21753 0.95585 1.00542 1.02462 1.19731 0.95425 0.91455 1.01211 1.20067 1.11931 0.98565 0.92284 1.21505 1.07105 0.94882 0.99015 1.23668 1.09309 1.00001 0.82158 1.84067 1.65279 1.35346 1.21852 1.23564 0.95266 0.81369 0.98403 1.17675 0.94682 0.97804 0.80776 0.92168 1.21806 0.95492 0.98466 1.03744 1.21061 1.21424 1.15163 0.97116 0.92335 1.24930 0.96571 0.95514 0.96814 1.69878 1.42833 1.31524 1.08610 0.86461 0.81304 0.80810 0.79053 1.19729 1.20894 1.20884 0.91408 0.93462 0.93524 0.91442 0.92587 0.84898 0.79546 0.89090 0.96969 0.94940 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.89 37.16 0.37 -2.14 15 2 C -0.04 -0.73 5.96 -27.88 -0.17 -0.90 15 3 C -0.23 -4.69 5.42 -104.74 -0.57 -5.25 15 4 C -0.21 -3.74 10.87 -39.70 -0.43 -4.17 15 5 C -0.08 -1.53 12.09 29.42 0.36 -1.17 15 6 O -0.17 -3.85 10.65 5.72 0.06 -3.78 15 7 C 0.07 1.53 5.76 -35.63 -0.21 1.32 15 8 C 0.11 2.78 2.66 -92.92 -0.25 2.53 15 9 H 0.06 1.59 6.91 -51.93 -0.36 1.24 15 10 C -0.14 -3.40 8.95 37.16 0.33 -3.07 15 11 C -0.51 -14.16 8.55 -34.44 -0.29 -14.46 15 12 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 13 C 0.06 1.73 5.30 -17.82 -0.09 1.64 15 14 N -0.89 -24.92 11.32 55.43 0.63 -24.30 15 15 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 15 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 19 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.07 1.24 7.39 -51.93 -0.38 0.86 15 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.13 2.00 8.06 -52.49 -0.42 1.58 15 25 H 0.19 2.52 8.06 -52.48 -0.42 2.10 15 26 H 0.09 2.40 6.07 -51.93 -0.32 2.09 15 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 15 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 LS Contribution 249.67 15.07 3.76 3.76 Total: -1.00 -28.87 249.67 -5.50 -34.37 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.98 Total: -0.68 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -0.95 Total: -25.67 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.63 Total: -24.30 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: 0.06 Total: -3.78 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.87 -5.50 -34.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244237.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.936 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds